LOC120560183


Basic Information

Item Value
gene id LOC120560183
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40886649 ~ 40917919 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU91192
tcctccagagtacccctagggggacacgtaccccctgcagtcctccagagtacccctagggggacacgtaccccctgcagtcctccagagtacccctagggggacacgtaccccctgcagtcctccagagtacccctagggggacacgtaccccctgcagtcctctagAGTacctgtcggtacacgatccgttctgcacatgcgcaaaatgttcgcgcTCGCTGTATGTACGATGATTCCCGACGCCgcccgatctgttccacgcttcctgtcgacagccaagctaacgttagtttagctaacggtagtttagctaacggctaattcggctaaccgctagctgagacggcatgtaataacttttaaaaagaccctcaaaataaaacctcaaaataaaacgttaacatatataacagctgttaggtCAGCTCTACTTtactacttgtgctcatttaaaatacaatcactcaataattgtgtttattgttattactgtaaattctTAATGTAGCCgtagcctgcttctcccattaagtttgttattttagactgaatctagctagctagcggttagccgaattagctggctaaaggctagcgtggaacctaggggggacacgtacccccatttgagaaacactggtctagAATATCTTTCcgagtgtgttttgtgtaaatcATTCCCATGTTTAGAGATTATATGAGTTTGTAGATGTTGGAAATGTCTATTTTTCTAAATACTGTTAAAGGGAGAGACTCTAGAGGCAAAAACATGTTGTTTAATGTATAGATTATAGATTTTGGACTATTTATCGTCCATAAAATGTGTTCTTTCAGACGAGTGGAcagaacatttatttttctacaCGTAAAAGTTAAGTAGTAAGTTAAAAGTTAGCATTAGCTAATGCCTCATTTAGCATATTTAACCCTCCTCCTGTTGTCATTgtgttttcaaaaagtttctgtaTCAcaaaatttgggttttctttcaaacaaattgtcACCGTGTGGACGGTAACGTTTGGTAAAGGTTAGGTAAAGGTTAGGTAAAGGTTAGGTAAAGGTTTGGTAAAGGTTAGGTAAAGGTTAGGTAAAGGTTTCTGTGTTAGATGTTGACTGTTGACCTCCTCCTGTAATGTTGTCATTCATTCCTCtgtttacaataaaatacacaACCAAACATGTCTAATGGGGTCTGaatactgtgtgtttttgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctc
>XR_005639434.1
cgaattagctggctaaaggctagcgtggaacctaggggggacacgtacccccatttgagaaacactggtctagAATATCTTTCcgagtgtgttttgtgtaaatcATTCCCATGTTTAGAGATTATATGAGTTTGTAGATGTTGGAAATGTCTATTTTTCTAAATACTGTTAAAGGGAGAGACTCTAGAGGCAAAAACATGTTGTTTAATGTATAGATTATAGATTTTGGACTATTTATCGTCCATAAAATGTGTTCTTTCAGACGAGTGGAcagaacatttatttttctacaCGTAAAAGTTAAGTAGTAAGTTAAAAGTTAGCATTAGCTAATGCCTCATTTAGCATATTTAACCCTCCTCCTGTTGTCATTgtgttttcaaaaagtttctgtaTCAcaaaatttgggttttctttcaaacaaattgtcACCGTGTGGACGGTAACGTTTGGTAAAGGTTAGGTAAAGGTTAGGTAAAGGTTAGGTAAAGGTTTGGTAAAGGTTAGGTAAAGGTTAGGTAAAGGTTTCTGTGTTAGATGTTGACTGTTGACCTCCTCCTGTAATGTTGTCATTCATTCCTCtgtttacaataaaatacacaACCAAACATGTCTAA

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91192 True 1304 lncRNA 0.42 3 40886649 40917919
XR_005639434.1 False 617 lncRNA 0.36 2 40887224 40887877

Neighbor

gene id symbol gene type direction distance location
wu:fa19b12 NA coding upstream 3090 40878899 ~ 40883559 (+)
carnmt1 carnmt1 coding upstream 16674 40849730 ~ 40869975 (+)
LOC120560177 NA coding upstream 52104 40820609 ~ 40834545 (+)
tmc2b tmc1,LOC103356627 coding upstream 108604 40737947 ~ 40778045 (+)
tmc1 LOC104961758,LOC103356604,LOC106904573,LOC103470573 coding upstream 157828 40698916 ~ 40728821 (+)
rorb rorb coding downstream 98734 41016653 ~ 41070906 (+)
LOC120560189 LOC104961756,LOC103367624,LOC102788780 coding downstream 304783 41222702 ~ 41254622 (+)
lsm1 lsm1,LOC103396910,LOC103398031 coding downstream 680308 41598227 ~ 41605767 (+)
LOC120560217 NA coding downstream 692013 41609932 ~ 41619652 (+)
LOC120560213 NA coding downstream 712817 41630736 ~ 41635889 (+)
G68299 NA non-coding upstream 17657 40868430 ~ 40868992 (+)
G68280 NA non-coding upstream 35421 40801118 ~ 40851228 (+)
G68289 NA non-coding upstream 100698 40785552 ~ 40785951 (+)
G68252 NA non-coding upstream 141628 40744324 ~ 40745021 (+)
G68251 NA non-coding upstream 160836 40725320 ~ 40725813 (+)
G68284 NA non-coding downstream 10543 40928462 ~ 40929349 (+)
G68281 NA non-coding downstream 32279 40950198 ~ 40950589 (+)
G68323 NA non-coding downstream 118195 41036114 ~ 41043825 (+)
G68324 NA non-coding downstream 121663 41039582 ~ 41043179 (+)
G68325 NA non-coding downstream 123448 41041367 ~ 41041937 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other upstream 488526 40379395 ~ 40398123 (+)
G68173 NA other upstream 652058 40233473 ~ 40234591 (+)
vps33a vps33a other upstream 722224 40133766 ~ 40164425 (+)
LOC120560010 sds other upstream 1008153 39862463 ~ 39878496 (+)
G68023 NA other upstream 1425171 39410222 ~ 39461478 (+)
G68309 NA other downstream 65905 40983824 ~ 41070649 (+)
LOC120561096 NA other downstream 163688 41081607 ~ 41097796 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other downstream 217858 41135777 ~ 41270849 (+)
LOC120561097 LOC106674743,LOC106674997,LOC102290162 other downstream 348728 41266647 ~ 41267519 (+)
G68349 NA other downstream 448665 41366584 ~ 41404814 (+)

Expression


Co-expression Network