tmc1 (LOC104961758,LOC103356604,LOC106904573,LOC103470573)


Basic Information

Item Value
gene id tmc1
gene name LOC104961758,LOC103356604,LOC106904573,LOC103470573
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40698916 ~ 40728821 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804051.1
ATGGGTACTTCTGCATATACCAAGGAGTACTTCTGCCTCAGGGGTACTTCTACATATGCCAGGGGCTACTTGGCTGTGCAGCTCGTTGACGTTGGACTGGAATTGGAAGGTaatgaagaggaagaggaagatgaaagagaaagacacagaggaCGAAGAAGGGATGGTgatagagagaaaaagaagaggggaaatgggaggaggagaagatCATCTAGAGGAGAAAGAGGCGAAGAGGAGTTACAGACCAGGgttgagaaaagagaaagaggcaggatgaagaaaggaaggagggaTCCAGAAgcaaaaggaagagagagggaagaagaagaagaagaagaggaggagcggCCTGAAATAAAAAGCTGTAAGACGGCAAAAACAAGGAAGAatatcaaaaatgaaaatgcaagaaaaatggaggaggaagaggaggaaagaaatgccaagaagaaaaagaaacatggaagtgccaaaagagagagagaagaggacagaagtaaatgtacagtgaagGAGAAAGCTCgggaagggaggaggagaaagcaCAAGAGAGTAGAAACaagTTCGGAGCCGGAGACGAGTGAGGAAGACGACTTGAAAGAGGAGACGGAGGAGAGGGAGGTGCGGCCGGAGAGTCTGTCTCCGGAGGAGCTGGAGATGCTGAAGGAAGCcgtggaggagaagaagaaactgGTCCAGGGTCTGAGGGGGAAACCCTGGCCCATGAAGAAGAAACTCGTGACGTTACGGGAGTCTCAGGAGTTTGTGGAGAAATATGAGGGAGCTTTGGGGAAAGGGAAAGGCAGGAAGCTCTACGCTTACAAAGTCATGATGTCCAAGAAATGGATGAAGTTTCAACGGGACTTTGAAAACTTCAAAACTGCCTGCATCCCATGGGAGATGAAAATCAAGGAGATTGAAAGTCATTTTGGCTCCTCGGTTGCTTCTTACTTCATCTTCCTGAGGTGGATGTACGGCATCAACATgatcttgttttgtctgacgtTTGGCCTTGTTATGGTCCCAGAGGCGTTAATGGGGCGGCCGTACGGCACCATCCCAAGAAAGACTGTCCCCAGGGCTGAGGCGCCCAGTGCCATGGACTTTGCTGTCTTGTGGGACTTTGGAGGTTATGCTCAGTATTCAGTCCTCTTCTACGGTTACTACAACAACCAGCGTGCCATTGGTTGGCTCAAGTTCCGTATGCCGCTGTCATACTTCCTGGTTGGTGTGGGAACGGTGGCCTACAgctacatggtggtcataagaACGATGGCGCGTAACGCAAATGAATCGGGGGTCGGGGACGATAACAGCTTTAATTTTAGCTGGAAGATATTCACCAGCTGGGACTACCTGATAGGAAACCCTGAGACTGCAGACAATAAGTTCGCCTCCATCACCACCAGCTTTAAGGAGGCGATCTTAGAGGAGCAGGAGAGCCGCAAGGACGACAACATCCACCTGACTCGTTTTCTGCGCGTGCTCGCCAACTTCCTGGTCTTGTGCTGCCTGGCGGGAAGCGGATACCTCATCTACTTTGTGGTGCGTCGCTCTCAGAAGTTCGCCCTGGAAGGACTGGAGACTCACACCTGGTGGGAAAGGAACGAGGTGAACATGGTCATGTCCTTACTGGGGATGTTCTGCCCCATGCTGTTCGATGTCATCAGCGCCCTGGAGAACTACCACCCCCGGGTGGCCCTGCAGTGGCAGCTGGGCCGCATCTTCGCCCTCTTCCTGGGAAACCTGTACACCTTCATCATCGCACTCATGGACGAGATCAACCTCAAAagggaagaggagaagaTCATAAAGTTTAATATAACCACGTGGGAAGCCAGTCTTTACAATGCGACGGGATCAGAAAACAGCACGGCTCCCCCCGTCACTTTCCATCCGGCTGATGTTCCCAGAGGGCCGTGCTGGGAGACCATGGTGGGCCAGGAGTTTGTCCGGCTGATCATTTCTGACACCATGACGACTTACATCACGCTGCTGATTGGCGACTTCCTGCGAGCCGTGCTCGTTCGTTTTCTCAACTACTGCTGGTGTTGGGACCTGGAGGCTGGGTTTCCGTCGTACTCCGAGTTTGACGTCAGCGGGAACGTTTTGGGTCTGATCTTCAACCAAGGAATGATATGGATGGGAGCTTTCTACGCCCCGTGCCTGCCGGCGCTGAACGTCCTGCGGCTCCACGTGTCCATGTACCTGCAGTGCTGGGCCGTGATGTGCTGCAACGTGCCGCAGGAACGCGTCTTCAAGGCCTCCGGCTCCAACAACTTCTACATGGCCATGCTGCTGgtcatcctcttcctctccacGCTGCCGGCCATCTACACCATCGTCACCATCCCACCTTCCTTCGACTGCGGACCCTTCAGTGGGAAGAAACGTATGTTTGATGTGATCCAGGAGACTCTCGAGTCGGACTTCCCTGCCTGGTTTAGTAAAGTGTTCAGCTATGCCTCTAACCCCGGACTGGTGCTACCCTTCATATTGCTCATGGTACTGGCCATTTATTACTTACAATCCACATCCAAAAGCTACAAAGAAGCTAACGTGGACCTGAAGAAAAAACTACAGACGCAAAATGAGGAGAACAAGAGGAAGAACAAGCTGGCGGCGCTGAAGGCCCAGACGGACCTGGAGGAGGCCAGAGCTGCGACGCAGACGGCCGAGCGACAGAAGAACATCAACGCTTCACTACAACGCCAACACGcagaggaggaagaagacctCGGCAGTAGTCAGAGGAAGAACGGACGCCCTCCTCCTTCAGTTAGACACCAAGATGGCCGCCCTCCGGCCACCAGAGCCCCCGTCCCCAGGACCCTCCACCCTGACACCCATAGGTCTCTGGGGTACCTGCCCGGTGGCGGTTTCCCTCAGCAACGGGAACCCAGAATGCACCGGGTGCCGAGCCTGCAGAGACACTGAGGGATGGAAAAACAGGACGTCGTTGGCAGATGTCAatcaaaacaagcactttaacGAGAATTTCCATGGTTAGTCagttattttcctttttaaactTTGTATTCTGTTGGCATTTTGAATTAGTAGCCTGGTTGTTTCTTTGTTTACTAAATAAACATTAACAAGG

Function

NR:

description
transmembrane channel-like protein 1

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804051.1 True 3106 mRNA 0.52 20 40698916 40728821

Neighbor

gene id symbol gene type direction distance location
es1 LOC102195758,LOC101474177,LOC100709427,LOC104961732 coding upstream 5857 40684239 ~ 40693059 (+)
tmem127 tmem127,LOC106585551 coding upstream 20641 40667325 ~ 40678275 (+)
snrnp200 snrnp200 coding upstream 56747 40566070 ~ 40642169 (+)
zfand5a zfand5 coding upstream 142850 40534048 ~ 40556066 (+)
igsf9b NA coding upstream 192430 40400615 ~ 40506486 (+)
tmc2b tmc1,LOC103356627 coding downstream 9126 40737947 ~ 40778045 (+)
LOC120560177 NA coding downstream 91788 40820609 ~ 40834545 (+)
carnmt1 carnmt1 coding downstream 120909 40849730 ~ 40869975 (+)
wu:fa19b12 NA coding downstream 150078 40878899 ~ 40883559 (+)
rorb rorb coding downstream 287832 41016653 ~ 41070906 (+)
G68231 NA non-coding upstream 53762 40644849 ~ 40645154 (+)
G68230 NA non-coding upstream 85484 40607858 ~ 40613432 (+)
G68228 NA non-coding upstream 99880 40578944 ~ 40599036 (+)
G68222 NA non-coding upstream 214803 40483677 ~ 40484113 (+)
G68217 NA non-coding upstream 233291 40463203 ~ 40465625 (+)
G68252 NA non-coding downstream 15503 40744324 ~ 40745021 (+)
G68289 NA non-coding downstream 56731 40785552 ~ 40785951 (+)
G68280 NA non-coding downstream 72297 40801118 ~ 40851228 (+)
G68299 NA non-coding downstream 139609 40868430 ~ 40868992 (+)
G68277 NA non-coding downstream 142710 40871531 ~ 40903085 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other upstream 300793 40379395 ~ 40398123 (+)
G68173 NA other upstream 464325 40233473 ~ 40234591 (+)
vps33a vps33a other upstream 534491 40133766 ~ 40164425 (+)
LOC120560010 sds other upstream 820420 39862463 ~ 39878496 (+)
G68023 NA other upstream 1237438 39410222 ~ 39461478 (+)
G68285 NA other downstream 138426 40867247 ~ 40897108 (+)
trpm6 NA other downstream 162908 40891729 ~ 40949978 (+)
G68309 NA other downstream 255003 40983824 ~ 41070649 (+)
LOC120561096 NA other downstream 352786 41081607 ~ 41097796 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other downstream 406956 41135777 ~ 41270849 (+)

Expression


Co-expression Network