LOC120560177


Basic Information

Item Value
gene id LOC120560177
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40820609 ~ 40834545 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802424.1
TGCATGGGCCGAGCAAATAAGACTTTGAGACAGAATAAACAATGCTAAAGTACAGTTTCTCTGATTTATCCTATAAAAAGGAACATCTCTCTTTGTCCAGACTATGTTTCTCTGTCTGCACTTTAACCAGGAGAAGTTCACAATGACGATGCGTGCAGCCCTGGGTCTCTGGGTCCTATCAGCGGTGATCTGCGTGGGCAGAGGCCATCACCAACCCGATCACCATTTGGGTCACGGCAACGACGAGACCGGCCAAGACACCGTAGCGGACGGCAGCGCCAGCAGCATCTCCCTGGTGAACGAAGCAAACCAAGAGTTTTCCTTCCGACTCTACAGGCAGTTAGCAGCTCATGCTGACTCTCAGGGAAAGAATATCTTCTTCTCCCCGGCTAGTGTGTCGGCCGCCTTGGCAGCGTTGTCCGTGGGAGCGCAGGGGGAGACTCACCGTCAGCTTTTCAGTGGCCTGGGCTTCAACAGCTCCCTCCTGACGCAGACAGATGTGAACCAGGTCTTCCAGACGATCCTCCAGAGGGCCAACAACACATCTCAGGAGGACGCCAGCGAAGGGACCTCCGTGTTCGTGGACAACCGCTTCAAGCCGAAGCCGGAGTTCCTGCAGACCCTGAAGCAGTCGTACCTCGCAGATGGGTTCAATGTGGACTTCACCAAAGCCGCAGAAAGTGCTGATACCATCAATAAGTACGTGGAGGAGAAGACCAACGGGAAGATTGACAAGCTGGTGGAAAgcctggatccaaacacagtcATGTATCTCATCAGCTACATCTACTACAAAGGAAAGTGGGAGACTCCGTTTGACCCTGAGCTCACTGAGCAGGATGACTTCAACGTGGACGAGAACACCAAGGTTTCAGTCGACATGATGAATATGGAGGATGATTTCTACACCTATCACGACCGCGATCTGAACACGACGGTCCTTCAGCTGCCCTTCAAAAGCTCCTACTCCATGCTGCTGATGTTGCCTGACGTCATGGCAACGCTGGAGAACGGCATTTCCCCAAACCACGTCACCAAATGGTTGAAGGCTTTGGTGACACCCAGGAGACATGATGTATACATTCCAAAGTTCTCCATCAAGACTTCCTACAACCTGAACGATGTGCTGACAGAAATGGGAATGACAGATATGTTTGGTGAGCGTGCAAATTTGAGAGGCATTTCAGAGGAGCAAAGACTGGCAGTCTCAGATGTTGTGCACAAAGCTACCCTGGACGTGGACGAGGCCGGAGCCGAAGCTTCAGCTGCCACAGGCATCGGCATCACGCTGGGGTCTGCCTGGTTCCCGGACCCTGTCCCTGTGTTGAAGTTCAATCGTCCGTTCATGGTCCTCATCACTGAACGTAACACGGACAAAATCCTCTTCTTGGGGAAGATTGTCAACCCAACCATCTGATGCATCATCACTTTGTGTCAACTCGAGCACAGCTGTTGCATCTCATATCCGAAAAACTTTAGTTTTGTTGTCTCTTGCTTTATTGAGAGTTTAAACAGTTTTTATATAATGATCTTTGAAGGTAATATAATGTAGGGATAAAATATGATCAACTTCCATAAGCATTTGGTATTTATTTATAACAGAGATCAGCTTTAGACAAATACAATAGAGCTCAACACTTTTTGAACCGCTCTCATTCTGGGTATTAAAATCctatacttaagtaaaaagtacaagtcctgcattgaaaatgttacttcagtaaaagtatttaagtatcatcaggaacatGTACTTAaagtttaaaagtaaaagtacttcatccagaaaaatcctcaaattgttgatttcatacggacttgtgtcttctacaggagcagaaactttgcttCACAACCTCACAGCTTGGGGTCagtctaccttggatggtttagacattgtagctaataatcaaaatccttataGAGAAAATGAATTGGATTTTTAAAGTTGACGGGACAGTGTGAATGCTGTACGTTCAACCCTGGATTGCTGGCTTGAATGTGTAAGAAGTAGTTGAAGTAGAaggaatagttgaaaaagtgagaATGGGTTAATTTGGTATGAATGTCACAGAGAAGTTAAATAatacaaatttatttatttattcgggacagtgcacattaatgaacaatctCACATTTCTGTACagactgtaaatgagccaggttatagcataaatgctaatttccacctgtagtcccgaggcaggaaaacaacaacatacaagataatgcaaaacagaaaaatatttcAATATACAATATCAAACAAGGAACACATTAGCACGCATTCAGacagattacattacatcaatAAAATTACTCAAAATGATGACATAACTGGGAACTTTTAAGAAATTGTTAaaagtgctttttaaatgtgcagtAAGTTGGACATTCTCTTATGTTTGATGGGATTCTGTTCCAAAAATGACCTCCTCTGATAGACAGAACAGTTTGTCCAAAGGTAGTTTTTCTATGCGGGATCTCTATATCTCCTCTAAATGAAGCTCTGGTACAATGACCTCTGTCAGACCTTAGTTTGATGTATCTAGAAAGCAAAGGTGGAGCAAGTCCATGAAAACTTTATGAATTAAACAACAGTTTTTaaaattttcaaaattaa
>XM_039802425.1
AATGCATGGGCCGAGCAAATAAGACTTTGAGACAGAATAAACAATGCTAAAGTACAGTTTCTCTGATTTATCCTATAAAAAGGAACATCTCTCTTTGTCCAGACTATGTTTCTCTGTCTGCACTTTAACCAGGAGAAGTTCACAATGACGATGCGTGCAGCCCTGGGTCTCTGGGTCCTATCAGCGGTGATCTGCGTGGGCAGAGGCCATCACCAACCCGATCACCATTTGGGTCACGGCAACGACGAGACCGGCCAAGACACCGTAGCGGACGGCAGCGCCAGCAGCATCTCCCTGGTGAACGAAGCAAACCAAGAGTTTTCCTTCCGACTCTACAGGCAGTTAGCAGCTCATGCTGACTCTCAGGGAAAGAATATCTTCTTCTCCCCGGCTAGTGTGTCGGCCGCCTTGGCAGCGTTGTCCGTGGGAGCGCAGGGGGAGACTCACCGTCAGCTTTTCAGTGGCCTGGGCTTCAACAGCTCCCTCCTGACGCAGACAGATGTGAACCAGGTCTTCCAGACGATCCTCCAGAGGGCCAACAACACATCTCAGGAGGACGCCAGCGAAGGGACCTCCGTGTTCGTGGACAACCGCTTCAAGCCGAAGCCGGAGTTCCTGCAGACCCTGAAGCAGTCGTACCTCGCAGATGGGTTCAATGTGGACTTCACCAAAGCCGCAGAAAGTGCTGATACCATCAATAAGTACGTGGAGGAGAAGACCAACGGGAAGATTGACAAGCTGGTGGAAAgcctggatccaaacacagtcATGTATCTCATCAGCTACATCTACTACAAAGGAAAGTGGGAGACTCCGTTTGACCCTGAGCTCACTGAGCAGGATGACTTCAACGTGGACGAGAACACCAAGGTTTCAGTCGACATGATGAATATGGAGGATGATTTCTACACCTATCACGACCGCGATCTGAACACGACGGTCCTTCAGCTGCCCTTCAAAAGCTCCTACTCCATGCTGCTGATGTTGCCTGACGTCATGGCAACGCTGGAGAACGGCATTTCCCCAAACCACGTCACCAAATGGTTGAAGGCTTTGGTGACACCCAGGAGACATGATGTATACATTCCAAAGTTCTCCATCAAGACTTCCTACAACCTGAACGATGTGCTGACAGAAATGGGAATGACAGATATGTTTGGTGAGCGTGCAAATTTGAGAGGCATTTCAGAGGAGCAAAGACTGGCAGTCTCAGATGTTGTGCACAAAGCTACGCTGGACGTGGACGAGACCGGAGCCACCGCTGCGGACGCCACAGGCATCGGCATTGCGTTCTATTCTGGCTTCGAGGCCCCTGTCCCCGTGTTGAAGTTCAATCGTCCGTTCATTGTCCTCATCATTGAACGCAACACTGAGAAAATCCTCTTCTTGGGCAAGATTATCAACCCAACCATCTGATGGATCATGACTTTGTGTTTTGCTCGAGCACAGTTGTT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802424.1 True 2626 mRNA 0.44 6 40820611 40827805
XM_039802425.1 False 1454 mRNA 0.52 6 40820609 40834545

Neighbor

gene id symbol gene type direction distance location
tmc2b tmc1,LOC103356627 coding upstream 42564 40737947 ~ 40778045 (+)
tmc1 LOC104961758,LOC103356604,LOC106904573,LOC103470573 coding upstream 91788 40698916 ~ 40728821 (+)
es1 LOC102195758,LOC101474177,LOC100709427,LOC104961732 coding upstream 127550 40684239 ~ 40693059 (+)
tmem127 tmem127,LOC106585551 coding upstream 142334 40667325 ~ 40678275 (+)
snrnp200 snrnp200 coding upstream 178440 40566070 ~ 40642169 (+)
carnmt1 carnmt1 coding downstream 15185 40849730 ~ 40869975 (+)
wu:fa19b12 NA coding downstream 44354 40878899 ~ 40883559 (+)
rorb rorb coding downstream 182108 41016653 ~ 41070906 (+)
LOC120560189 LOC104961756,LOC103367624,LOC102788780 coding downstream 388157 41222702 ~ 41254622 (+)
lsm1 lsm1,LOC103396910,LOC103398031 coding downstream 763682 41598227 ~ 41605767 (+)
G68289 NA non-coding upstream 34658 40785552 ~ 40785951 (+)
G68252 NA non-coding upstream 75588 40744324 ~ 40745021 (+)
G68251 NA non-coding upstream 94796 40725320 ~ 40725813 (+)
G68249 NA non-coding upstream 98313 40721759 ~ 40722296 (+)
G68233 NA non-coding upstream 101963 40649105 ~ 40718646 (+)
G68299 NA non-coding downstream 33885 40868430 ~ 40868992 (+)
G68277 NA non-coding downstream 36986 40871531 ~ 40903085 (+)
LOC120560183 NA non-coding downstream 52104 40886649 ~ 40917919 (+)
G68283 NA non-coding downstream 53788 40888333 ~ 40893153 (+)
G68286 NA non-coding downstream 57787 40892332 ~ 40892653 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other upstream 422486 40379395 ~ 40398123 (+)
G68173 NA other upstream 586018 40233473 ~ 40234591 (+)
vps33a vps33a other upstream 656184 40133766 ~ 40164425 (+)
LOC120560010 sds other upstream 942113 39862463 ~ 39878496 (+)
G68023 NA other upstream 1359131 39410222 ~ 39461478 (+)
G68285 NA other downstream 32702 40867247 ~ 40897108 (+)
trpm6 NA other downstream 57184 40891729 ~ 40949978 (+)
G68309 NA other downstream 149279 40983824 ~ 41070649 (+)
LOC120561096 NA other downstream 247062 41081607 ~ 41097796 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other downstream 301232 41135777 ~ 41270849 (+)

Expression


Co-expression Network