rorb (rorb)


Basic Information

Item Value
gene id rorb
gene name rorb
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41016653 ~ 41070906 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802429.1
TTTCTGTTCTCCCGGTGACTTTGTGTGACTCTAAACTTCTCCGAAAGTTCCTAAAACTTGCAGAATGGAGGATGAGGGAGGGACTGTGTGCGATGGGATTACACGTGAACGTCTATTTCAGCTGTGGATAAGCCCGTGCTCATCTGAGGAGGGAAATAATTTAGGATTAGATGGGCTGTGTAATCTCTTTATAGACGGTGTGCCATCTCAGCAGACATACCTGCCTACGACTACATCTCATGCCCCTGAAGGCACCgcaccgctctctctctctctctctctttctctacatACATTATGGATAGTAAGACATCCAAAGATGCCAGCTGTGTGTTGCACTGAAAGACTTTCTGTTGTTCACGTTCTGTGCCTTTTGGTTGGGACTGTACATGGAGCTGCCGATACACAcccAAATCGAAGTCATACCCTGCAAAATCTGCGGAGACAAGTCCTCAGGGATCCACTACGGAGTCATAACGTGTGAGGGATGCAAGGGCTTCTTCAGACGGAGTCAGCAGAACAACGCGTCCTACTCCTGTCCACGCCAGAGGAACTGCCTCATCGACCGAACTAACCGCAACCGCTGCCAACACTGCCGGCTGCAGAAGTGTCTGGCCCTGGGCATGTCCAGAGACGCGGTGAAGTTCGGGCGCATGTCGAAGAAGCAGCGCGACAGCCTGTACGCCGAGGTCCAGAAGCACCAGGCCCGGCTCCAGGAGCAGCGCCAGCAGCAGACCGGCGAGGCCGAGGCCCTGGCGCGCGTCTACTCCTCCAGCCTCTCCAACGGCCTGACCACGCTCAACCACGAGATCGGAGCCACCTACGCCAACGGGCACGTCATCGAGCTGCCCAAAGGCGCCCACGGCAACGGAGTGGTGGGCGGAGCGGGAGGGGTCCCCGGGGGGTATTATGGGATGGATTCCACCCAGCCGTCTCCGGACCAGTCCGGCCTGGACATGTCGGGCATGAAGCACATTAAGCAGGAGCCGGTGTACGACCTGACGCCCGTGCCGAACCTGTTCAGCTACGCGGGCTACCAGGACAGTCAGCTGGGGCCCAACAACGTCAGCATGGGCGAGCTGGACCGCATCGCTCAGAATATCATCAAGTCTCACCTGGAGACGTGTCAGTACACGACGGAGGAGCTGCAGACGCTCGCCTGGCAGACACACTCCTACGAAGAAGTCAAGATGTACCAGAGCAAGCCGCGGGACGCTCTGTGGCAGCAGTGTGCCATCCAGATCACACACGCCATCCAGTACGTGGTGGAGTTCGCCAAACGCATCTCAGGGTTCATGGAGCTGTGCCAGAATGACCAGATCCTCCTGCTGAAGTCAGGGTGCTTGGAGGTGGTGTTGGTGCGGATGTGCCGGGCGTTCAACCCCCTCAACAACACAGTGCTCTTTGAAGGGAAGTACGGAGGCATGCAGATGTTCAAAGCTCTCGGTTGCGATGACTTGGTGAGCGCCGTGTTCGACTTTGCCAAAAGTTTGTGTTCCCTGCAGCTGACTGAGGAGGAGATCGCCCTCTTCTCTGCTGCTGTACTAATCTCTACAGATCGGCCGTGGCTGATGGAGCCTCGGAAAGTCCAGAAGCTGCAGGAGAAGATCTACTTTGCTCTGCAGCACATCATGCAGAAGAACCACATGGACGAAGACGCCCTGGCTAAG
>XM_039802430.1
AAAACAGTGAAACGCTCGCGCAGAGGTGACAGCCTACATGTCaagagaacagacagacagacacacacacacacacacacacacacgcacacacacagagaccgagCCGAGACCGAAGGCACCGTGCAACCTCATCCCGACTCCCTGCGCTCCTGCCTGGGATGCTTTTAGCGCAGAGACGCCTCCTCACCGGGCAGCTGCGACACTCTTTTCATCCTTgcttttgctgtttttatttttaaaaataaccGAGGAGTCCCACAGCCAGCCAGCCATTTTTTGAAGcgtttctgtttgtttcttcATGACTGCTGCTTTGGGAAGCGAGCCTCAGCACCGCCAGCACCATGCGAGcccAAATCGAAGTCATACCCTGCAAAATCTGCGGAGACAAGTCCTCAGGGATCCACTACGGAGTCATAACGTGTGAGGGATGCAAGGGCTTCTTCAGACGGAGTCAGCAGAACAACGCGTCCTACTCCTGTCCACGCCAGAGGAACTGCCTCATCGACCGAACTAACCGCAACCGCTGCCAACACTGCCGGCTGCAGAAGTGTCTGGCCCTGGGCATGTCCAGAGACGCGGTGAAGTTCGGGCGCATGTCGAAGAAGCAGCGCGACAGCCTGTACGCCGAGGTCCAGAAGCACCAGGCCCGGCTCCAGGAGCAGCGCCAGCAGCAGACCGGCGAGGCCGAGGCCCTGGCGCGCGTCTACTCCTCCAGCCTCTCCAACGGCCTGACCACGCTCAACCACGAGATCGGAGCCACCTACGCCAACGGGCACGTCATCGAGCTGCCCAAAGGCGCCCACGGCAACGGAGTGGTGGGCGGAGCGGGAGGGGTCCCCGGGGGGTATTATGGGATGGATTCCACCCAGCCGTCTCCGGACCAGTCCGGCCTGGACATGTCGGGCATGAAGCACATTAAGCAGGAGCCGGTGTACGACCTGACGCCCGTGCCGAACCTGTTCAGCTACGCGGGCTACCAGGACAGTCAGCTGGGGCCCAACAACGTCAGCATGGGCGAGCTGGACCGCATCGCTCAGAATATCATCAAGTCTCACCTGGAGACGTGTCAGTACACGACGGAGGAGCTGCAGACGCTCGCCTGGCAGACACACTCCTACGAAGAAGTCAAGATGTACCAGAGCAAGCCGCGGGACGCTCTGTGGCAGCAGTGTGCCATCCAGATCACACACGCCATCCAGTACGTGGTGGAGTTCGCCAAACGCATCTCAGGGTTCATGGAGCTGTGCCAGAATGACCAGATCCTCCTGCTGAAGTCAGGGTGCTTGGAGGTGGTGTTGGTGCGGATGTGCCGGGCGTTCAACCCCCTCAACAACACAGTGCTCTTTGAAGGGAAGTACGGAGGCATGCAGATGTTCAAAGCTCTCGGTTGCGATGACTTGGTGAGCGCCGTGTTCGACTTTGCCAAAAGTTTGTGTTCCCTGCAGCTGACTGAGGAGGAGATCGCCCTCTTCTCTGCTGCTGTACTAATCTCTACAGATCGGCCGTGGCTGATGGAGCCTCGGAAAGTCCAGAAGCTGCAGGAGAAGATCTACTTTGCTCTGCAGCACATCATGCAGAAGAACCACATGGACGAAGACGCCCTGGCTAAG

Function

symbol description
rorb Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 15. Orthologous to human RORB (RAR related orphan receptor B).

NR:

description
PREDICTED: nuclear receptor ROR-beta isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08533 NR1F2, RORB; RAR-related orphan receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802429.1 True 1670 mRNA 0.57 9 41054751 41070906
XM_039802430.1 False 1616 mRNA 0.58 9 41016653 41070906

Neighbor

gene id symbol gene type direction distance location
wu:fa19b12 NA coding upstream 133094 40878899 ~ 40883559 (+)
carnmt1 carnmt1 coding upstream 146678 40849730 ~ 40869975 (+)
LOC120560177 NA coding upstream 182108 40820609 ~ 40834545 (+)
tmc2b tmc1,LOC103356627 coding upstream 238608 40737947 ~ 40778045 (+)
tmc1 LOC104961758,LOC103356604,LOC106904573,LOC103470573 coding upstream 287832 40698916 ~ 40728821 (+)
LOC120560189 LOC104961756,LOC103367624,LOC102788780 coding downstream 151796 41222702 ~ 41254622 (+)
lsm1 lsm1,LOC103396910,LOC103398031 coding downstream 527321 41598227 ~ 41605767 (+)
LOC120560217 NA coding downstream 539026 41609932 ~ 41619652 (+)
LOC120560213 NA coding downstream 559830 41630736 ~ 41635889 (+)
LOC120560214 NA coding downstream 570424 41641330 ~ 41654650 (+)
G68148 NA non-coding upstream 58860 40557519 ~ 40957793 (+)
G68281 NA non-coding upstream 66064 40950198 ~ 40950589 (+)
G68302 NA non-coding upstream 70491 40907874 ~ 40946162 (+)
G68284 NA non-coding upstream 87304 40928462 ~ 40929349 (+)
LOC120560183 NA non-coding upstream 98734 40886649 ~ 40917919 (+)
G68332 LOC102301842,LOC102206335,LOC101474785 non-coding downstream 61277 41132183 ~ 41141445 (+)
G68340 NA non-coding downstream 142617 41213523 ~ 41214336 (+)
G68356 NA non-coding downstream 350033 41420939 ~ 41484804 (+)
G68358 NA non-coding downstream 361480 41432386 ~ 41549693 (+)
G68374 NA non-coding downstream 410337 41481243 ~ 41552744 (+)
trpm6 NA other upstream 66675 40891729 ~ 40949978 (+)
G68285 NA other upstream 119545 40867247 ~ 40897108 (+)
tmem230b tmem230,LOC101174675,LOC101077900,LOC105939206,LOC103146401,LOC102236919,LOC103356612,LOC107086812,LOC103399110,LOC103397697 other upstream 618530 40379395 ~ 40398123 (+)
G68173 NA other upstream 782062 40233473 ~ 40234591 (+)
vps33a vps33a other upstream 852228 40133766 ~ 40164425 (+)
LOC120561096 NA other downstream 10701 41081607 ~ 41097796 (+)
anxa1a anxa1,LOC103133394,LOC103146482 other downstream 64871 41135777 ~ 41270849 (+)
LOC120561097 LOC106674743,LOC106674997,LOC102290162 other downstream 195741 41266647 ~ 41267519 (+)
G68349 NA other downstream 295678 41366584 ~ 41404814 (+)
aebp1b LOC104948491,LOC103367614 other downstream 649894 41720800 ~ 41792911 (+)

Expression


Co-expression Network