G298603


Basic Information

Item Value
gene id G298603
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20358906 ~ 20359754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353660
CGCAGTCAtaggtcaagtcaagtcaagtcaagtggagtttattgtcatttcagccatatacaattacatagtgaaatgaaacaacgtttctccaggaccaaggtgctacataagacaacacagaacgacacagaactacggggactacataaattgaacataaagtgcacaagtgcaaacgtgtggacgcacaagacagaacaagacagtacaataactacaacgccaaccagtacgcagttctgtttgaaagtgaccaagtgacaatagtgcaaataatacagagtttgatataaatagctgaagtaatgtaaacattatggtattgtattatgtgtaaacatagtagtagcagcagcagcataaaacatgtgcaaaacatgtgcatggaagatgttcagttgtgtgtatgtgtatatatgtatgtgtgtgtgtgtgttccttccttcagtccagttctaggtgttgaggagtctgatggcatgagggaagaaactattgcacagtctggtcgtgaggcccgaatgcttcggtaccgtttaccagatggcaggagggtgaagagtgtgtgagaggggtgtgtggggtcatccacaatgctggtggctttgcggacgCAGCgggaggtgtaaatgtccgagatggagggaagagagaccccgatgatcttctcagctgtcctcactatccgctgcagggtcttgcgatctgagacagtgcaattcccaaaccaggcagtgatgcagctgcacaggatgctctcgatagtccctctgtagaacatggtgaggatggagggtgggagatgtgctttcctcagccttcgcagaaagtacaggcgctgctggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353660 True 849 lncRNA 0.46 1 20358906 20359754

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_8 NA coding upstream 26765 20332070 ~ 20332141 (+)
trnar-acg_14 NA coding upstream 30143 20328691 ~ 20328763 (+)
trnah-gug_18 NA coding upstream 31935 20326900 ~ 20326971 (+)
trnah-gug_17 NA coding upstream 35846 20322989 ~ 20323060 (+)
trnae-uuc_7 NA coding upstream 36515 20322320 ~ 20322391 (+)
LOC113524754 psmc1,LOC108443803,LOC108428647 coding downstream 21080 20380834 ~ 20390529 (+)
trnas-uga_11 NA coding downstream 71008 20430762 ~ 20430843 (+)
LOC113524742 LOC108270753,LOC108273219,LOC108274210,LOC108257668 coding downstream 107943 20467697 ~ 20478310 (+)
LOC113526589 LOC108261292,LOC108263642,LOC108273545,LOC108268894,LOC108270753,LOC108257668,LOC108270747,LOC108273546 coding downstream 172372 20532126 ~ 20550322 (+)
LOC113524745 LOC108258205 coding downstream 293468 20653222 ~ 20662654 (+)
G298602 NA non-coding upstream 584 20358060 ~ 20358322 (+)
G298596 NA non-coding upstream 20307 20310652 ~ 20338599 (+)
G298586 LOC108258222 non-coding upstream 63753 20279494 ~ 20295153 (+)
G298576 NA non-coding upstream 121587 20236844 ~ 20237319 (+)
G298511 NA non-coding upstream 168098 20183311 ~ 20190808 (+)
G298608 NA non-coding downstream 7380 20367134 ~ 20367364 (+)
LOC113524748 LOC108273219,LOC108270753,LOC108261257,LOC108261282,LOC108273546,LOC108273545,LOC108274210 non-coding downstream 151733 20511487 ~ 20512904 (+)
G298645 NA non-coding downstream 153177 20512931 ~ 20551519 (+)
G298660 NA non-coding downstream 179608 20539362 ~ 20539867 (+)
G298664 NA non-coding downstream 187090 20546844 ~ 20607796 (+)
LOC117599696 NA other upstream 274409 20082506 ~ 20084497 (+)
G298409 NA other upstream 812172 19401549 ~ 19546734 (+)
G298379 NA other upstream 1068367 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 1221293 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1830707 18495675 ~ 18528199 (+)
flrt2 flrt2,LOC108258011 other downstream 465935 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 973511 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1348604 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1391812 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 1606571 21966325 ~ 21972928 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G111604 NA non-coding CI01000020 null 603695 ~ 629505 (-)
rainbow trout (Oncorhynchus mykiss) G111179 NA non-coding NC_048566.1 CM023220.2 8670286 ~ 8670607 (-)
mexican tetra (Astyanax mexicanus) G94241 NA unknown NC_035906.1 CM008309.1 29382555 ~ 29383298 (+)