LOC113524745 (LOC108258205)


Basic Information

Item Value
gene id LOC113524745
gene name LOC108258205
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20653222 ~ 20662654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911100.2
TGTAAACCCACAACAGAAGAAGACGAGCTAACGGTTGAAGGGTCTCACTGAGGTAATCCTTTCTATTTGAAAAGATTTCTGACAGGACTATATAACAACAGATTggatggatttaaaaataaagcttgtttttgtatatatttgagGATGTTCACTGCATTCTGCTTTAAACCCTGAGAAACACAACCCTTCAGACCTCCTAATAAGACCTTAAAATGGAGTCAGCAGACGTTTGGCCATGTTGTTCTAGAAAGGCTCCAGACACTTCTGCTCCTGTTGGCTCACAGGTTTGCTGTAGTGTACGAACGGAAACTTGTACAGTGTCTGGGGGAGAGACATCAGGTTCTGTGGGACATGTCCCGGACCTTCAGAAAGatataaaaaaggaagaacCTGAATATGAAGAGTACGTTTGTGAAACCACGACAGGCTCTGTGGGACACATCACGCCTGTGtgtcaacacacacatgtaaaaaaggaagaagctgaagaagaagaCTATCTCTGTGATGGAACATCAAACTCTGTGGAAAACATAGTCCAACTGAACGGAGGATTTCATGTAAAAGAGGAAGAGTCTGAGGATGAAGACTACCTCCATACAATGGAAATGAACACTGCCCAGTTAGAAGTCTTGTCCTGCTCCTGGTGTTCACTTTCTAGTACGTCCCAAAATTACCTCCACAAACACATCAGAAGATGCCACTATGAGGAATATGAGAAGTTAAAATCAGGAGAGATAAAATATGAGAATCCGATGCCCATAATAAGCACCAGTATTCAGCAAACAGTCTCTGGTAATACCTCTGATCAGCGAATGAAGAAAGAAGTCTATCCctgctcagagtgtgggaagagttttgctGACCGGAGTAATCTCAGACGACACCAGTACATTCACACAGGGGTGAAGCCACATCACTGCTCATGGTgtggaaagtgttttattcaaagGAGAGATCTCAAAGAACACCAGGTCATTCACACcagagagaagccgtatcactgctcacagtgtgggaagagtttttcACGACAGCGTGACCTCCAAATACACCGACGcgttcacacaggagaaaagtTGTATAACTGCTCAGAGTGTTCAAAAAGTTTTAATCGACAGAGTAATCTCATACAACACCAGATCATTCACaccggagagaagccgtatcactgctcacagtgtgggaagggTTTTACTCGACAGAGTAATCTCATACAACACCAGGTCatccacacaggagagaagccgtatcagtgctcacagtgtgggaagagttttattcaCCAAAGTTATCTCCAACGACACCAGTGTGTTCACATGGGAGacaagccgtatcactgctcacaatGTGAAAAGAGTTTTACTCGACAGATTGATGTCCAGCGACACCAGCGTATCcacacaggagaaaagccatatcagtgctcacagtgtgggaagagcttTACTCGACAGAGTACTCTTAAATCACACtggcgcattcacacaggacaGAAGCCATATGACTGCTCGGAGTGTGGGAACAGTTTTACTCGACATAGTGATCTCCAGCGACACCAACgtgttcacacaggagagaaaccatATTGCTGCttacagtgtgggaagagttttactcgACATAGTACGCTCGAAGCACACCAGATCATTCACACAGGACAGAAGTATGGAGTTAAAATCATGCCATTAGAAATTTGAATGTTATTAATGAATTTTACACTGATCAAGTGTgacaaatggattaaaattttGTCAAATGCAGGGAAATGTGTATTGTTTCACTGATGCCAGCTACAGTGAAGGTATTTCATGCTTTCATGCTAGCACATATTCACTCCCAAAGCTGCCCTTACGTGAGGAGGAAAGATCTCAGTGGAGCGCAGATCATCTTGGCACTACAGAGCAAATCCCTGAAATGGTATATGTGCATGCTTTCTTTTGTCAATGTACTAAAACTAACATAGCTACTGACTTCACCTGTTTGGTTCTAGCCATTAGTGTGTTTTAAGAAGTGTCTAAGATACACTTTGGTGTATTTTTCAACTTAACATAAACcctaaattaaaatatacaaaaatgagAATGagcaataataattactggactTGTGCAATGATCAGCCAtatcattaaaaccactgacaggtgaagtgaataacattgattatcttgttacagt
>XM_026911101.2
AACTTTAACATGGCTGTAAACCCACAACAGAAGAAGACGAGCTAACGGTTGAAGGGTCTCACTGAGAAACACAACCCTTCAGACCTCCTAATAAGACCTTAAAATGGAGTCAGCAGACGTTTGGCCATGTTGTTCTAGAAAGGCTCCAGACACTTCTGCTCCTGTTGGCTCACAGGTTTGCTGTAGTGTACGAACGGAAACTTGTACAGTGTCTGGGGGAGAGACATCAGGTTCTGTGGGACATGTCCCGGACCTTCAGAAAGatataaaaaaggaagaacCTGAATATGAAGAGTACGTTTGTGAAACCACGACAGGCTCTGTGGGACACATCACGCCTGTGtgtcaacacacacatgtaaaaaaggaagaagctgaagaagaagaCTATCTCTGTGATGGAACATCAAACTCTGTGGAAAACATAGTCCAACTGAACGGAGGATTTCATGTAAAAGAGGAAGAGTCTGAGGATGAAGACTACCTCCATACAATGGAAATGAACACTGCCCAGTTAGAAGTCTTGTCCTGCTCCTGGTGTTCACTTTCTAGTACGTCCCAAAATTACCTCCACAAACACATCAGAAGATGCCACTATGAGGAATATGAGAAGTTAAAATCAGGAGAGATAAAATATGAGAATCCGATGCCCATAATAAGCACCAGTATTCAGCAAACAGTCTCTGGTAATACCTCTGATCAGCGAATGAAGAAAGAAGTCTATCCctgctcagagtgtgggaagagttttgctGACCGGAGTAATCTCAGACGACACCAGTACATTCACACAGGGGTGAAGCCACATCACTGCTCATGGTgtggaaagtgttttattcaaagGAGAGATCTCAAAGAACACCAGGTCATTCACACcagagagaagccgtatcactgctcacagtgtgggaagagtttttcACGACAGCGTGACCTCCAAATACACCGACGcgttcacacaggagaaaagtTGTATAACTGCTCAGAGTGTTCAAAAAGTTTTAATCGACAGAGTAATCTCATACAACACCAGATCATTCACaccggagagaagccgtatcactgctcacagtgtgggaagggTTTTACTCGACAGAGTAATCTCATACAACACCAGGTCatccacacaggagagaagccgtatcagtgctcacagtgtgggaagagttttattcaCCAAAGTTATCTCCAACGACACCAGTGTGTTCACATGGGAGacaagccgtatcactgctcacaatGTGAAAAGAGTTTTACTCGACAGATTGATGTCCAGCGACACCAGCGTATCcacacaggagaaaagccatatcagtgctcacagtgtgggaagagcttTACTCGACAGAGTACTCTTAAATCACACtggcgcattcacacaggacaGAAGCCATATGACTGCTCGGAGTGTGGGAACAGTTTTACTCGACATAGTGATCTCCAGCGACACCAACgtgttcacacaggagagaaaccatATTGCTGCttacagtgtgggaagagttttactcgACATAGTACGCTCGAAGCACACCAGATCATTCACACAGGACAGAAGTATGGAGTTAAAATCATGCCATTAGAAATTTGAATGTTATTAATGAATTTTACACTGATCAAGTGTgacaaatggattaaaattttGTCAAATGCAGGGAAATGTGTATTGTTTCACTGATGCCAGCTACAGTGAAGGTATTTCATGCTTTCATGCTAGCACATATTCACTCCCAAAGCTGCCCTTACGTGAGGAGGAAAGATCTCAGTGGAGCGCAGATCATCTTGGCACTACAGAGCAAATCCCTGAAATGGTATATGTGCATGCTTTCTTTTGTCAATGTACTAAAACTAACATAGCTACTGACTTCACCTGTTTGGTTCTAGCCATTAGTGTGTTTTAAGAAGTGTCTAAGATACACTTTGGTGTATTTTTCAACTTAACATAAACcctaaattaaaatatacaaaaatgagAATGagcaataataattactggactTGTGCAATGATCAGCCAtatcattaaaaccactgacaggtgaagtgaataacattgattatcttgttacagtg
>XM_034313537.1
GTTTGCTGTAGTGTACGAACGGAAACTTGTACAGTGTCTGGGGGAGAGACATCAGGTTCTGTGGGACATGTCCCGGACCTTCAGAAAGatataaaaaaggaagaacCTGAATATGAAGAGTGAAACCACGACAGGCTCTGTGGGACACATCACGCCTGTGtgtcaacacacacatgtaaaaaaggaagaagctgaagaagaagaCTATCTCTGTGATGGAACATCAAACTCTGTGGAAAACATAGTCCAACTGAACGGAGGATTTCATGTAAAAGAGGAAGAGTCTGAGGATGAAGACTACCTCCATACAATGGAAATGAACACTGCCCAGTTAGAAGTCTTGTCCTGCTCCTGGTGTTCACTTTCTAGTACGTCCCAAAATTACCTCCACAAACACATCAGAAGATGCCACTATGAGGAATATGAGAAGTTAAAATCAGGAGAGATAAAATATGAGAATCCGATGCCCATAATAAGCACCAGTATTCAGCAAACAGTCTCTGGTAATACCTCTGATCAGCGAATGAAGAAAGAAGTCTATCCctgctcagagtgtgggaagagttttgctGACCGGAGTAATCTCAGACGACACCAGTACATTCACACAGGGGTGAAGCCACATCACTGCTCATGGTgtggaaagtgttttattcaaagGAGAGATCTCAAAGAACACCAGGTCATTCACACcagagagaagccgtatcactgctcacagtgtgggaagagtttttcACGACAGCGTGACCTCCAAATACACCGACGcgttcacacaggagaaaagtTGTATAACTGCTCAGAGTGTTCAAAAAGTTTTAATCGACAGAGTAATCTCATACAACACCAGATCATTCACaccggagagaagccgtatcactgctcacagtgtgggaagggTTTTACTCGACAGAGTAATCTCATACAACACCAGGTCatccacacaggagagaagccgtatcagtgctcacagtgtgggaagagttttattcaCCAAAGTTATCTCCAACGACACCAGTGTGTTCACATGGGAGacaagccgtatcactgctcacaatGTGAAAAGAGTTTTACTCGACAGATTGATGTCCAGCGACACCAGCGTATCcacacaggagaaaagccatatcagtgctcacagtgtgggaagagcttTACTCGACAGAGTACTCTTAAATCACACtggcgcattcacacaggacaGAAGCCATATGACTGCTCGGAGTGTGGGAACAGTTTTACTCGACATAGTGATCTCCAGCGACACCAACgtgttcacacaggagagaaaccatATTGCTGCttacagtgtgggaagagttttactcgACATAGTACGCTCGAAGCACACCAGATCATTCACACAGGACAGAAGTATGGAGTTAAAATCATGCCATTAGAAATTTGAATGTTATTAATGAATTTTACACTGATCAAGTGTgacaaatggattaaaattttGTCAAATGCAGGGAAATGTGTATTGTTTCACTGATGCCAGCTACAGTGAAGGTATTTCATGCTTTCATGCTAGCACATATTCACTCCCAAAGCTGCCCTTACGTGAGGAGGAAAGATCTCAGTGGAGCGCAGATCATCTTGGCACTACAGAGCAAATCCCTGAAATGGTATATGTGCATGCTTTCTTTTGTCAATGTACTAAAACTAACATAGCTACTGACTTCACCTGTTTGGTTCTAGCCATTAGTGTGTTTTAAGAAGTGTCTAAGATACACTTTGGTGTATTTTTCAACTTAACATAAACcctaaattaaaatatacaaaaatgagAATGagcaataataattactggactTGTGCAATGATCAGCCAtatcattaaaaccactgacaggtgaagtgaataacattgattatcttgttacagtggca
>XM_034313538.1
GtgtcaacacacacatgtaaaaaaggaagaagctgaagaagaagaCTATCTCTGTAAGAAAACATGGTGATGGAACATCAAACTCTGTGGAAAACATAGTCCAACTGAACGGAGGATTTCATGTAAAAGAGGAAGAGTCTGAGGATGAAGACTACCTCCATACAATGGAAATGAACACTGCCCAGTTAGAAGTCTTGTCCTGCTCCTGGTGTTCACTTTCTAGTACGTCCCAAAATTACCTCCACAAACACATCAGAAGATGCCACTATGAGGAATATGAGAAGTTAAAATCAGGAGAGATAAAATATGAGAATCCGATGCCCATAATAAGCACCAGTATTCAGCAAACAGTCTCTGGTAATACCTCTGATCAGCGAATGAAGAAAGAAGTCTATCCctgctcagagtgtgggaagagttttgctGACCGGAGTAATCTCAGACGACACCAGTACATTCACACAGGGGTGAAGCCACATCACTGCTCATGGTgtggaaagtgttttattcaaagGAGAGATCTCAAAGAACACCAGGTCATTCACACcagagagaagccgtatcactgctcacagtgtgggaagagtttttcACGACAGCGTGACCTCCAAATACACCGACGcgttcacacaggagaaaagtTGTATAACTGCTCAGAGTGTTCAAAAAGTTTTAATCGACAGAGTAATCTCATACAACACCAGATCATTCACaccggagagaagccgtatcactgctcacagtgtgggaagggTTTTACTCGACAGAGTAATCTCATACAACACCAGGTCatccacacaggagagaagccgtatcagtgctcacagtgtgggaagagttttattcaCCAAAGTTATCTCCAACGACACCAGTGTGTTCACATGGGAGacaagccgtatcactgctcacaatGTGAAAAGAGTTTTACTCGACAGATTGATGTCCAGCGACACCAGCGTATCcacacaggagaaaagccatatcagtgctcacagtgtgggaagagcttTACTCGACAGAGTACTCTTAAATCACACtggcgcattcacacaggacaGAAGCCATATGACTGCTCGGAGTGTGGGAACAGTTTTACTCGACATAGTGATCTCCAGCGACACCAACgtgttcacacaggagagaaaccatATTGCTGCttacagtgtgggaagagttttactcgACATAGTACGCTCGAAGCACACCAGATCATTCACACAGGACAGAAGTATGGAGTTAAAATCATGCCATTAGAAATTTGAATGTTATTAATGAATTTTACACTGATCAAGTGTgacaaatggattaaaattttGTCAAATGCAGGGAAATGTGTATTGTTTCACTGATGCCAGCTACAGTGAAGGTATTTCATGCTTTCATGCTAGCACATATTCACTCCCAAAGCTGCCCTTACGTGAGGAGGAAAGATCTCAGTGGAGCGCAGATCATCTTGGCACTACAGAGCAAATCCCTGAAATGGTATATGTGCATGCTTTCTTTTGTCAATGTACTAAAACTAACATAGCTACTGACTTCACCTGTTTGGTTCTAGCCATTAGTGTGTTTTAAGAAGTGTCTAAGATACACTTTGGTGTATTTTTCAACTTAACATAAACcctaaattaaaatatacaaaaatgagAATGagcaataataattactggactTGTGCAATGATCAGCCAtatcattaaaaccactgacaggtgaagtgaataacattgattatcttgttacagtggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911100.2 True 2183 mRNA 0.42 6 20653236 20662650
XM_026911101.2 False 2072 mRNA 0.43 6 20653222 20662651
XM_034313537.1 False 1892 mRNA 0.42 4 20656114 20662654
XM_034313538.1 False 1746 mRNA 0.42 3 20656421 20662654

Neighbor

gene id symbol gene type direction distance location
LOC113526589 LOC108261292,LOC108263642,LOC108273545,LOC108268894,LOC108270753,LOC108257668,LOC108270747,LOC108273546 coding upstream 102900 20532126 ~ 20550322 (+)
LOC113524742 LOC108270753,LOC108273219,LOC108274210,LOC108257668 coding upstream 174912 20467697 ~ 20478310 (+)
trnas-uga_11 NA coding upstream 222379 20430762 ~ 20430843 (+)
LOC113524754 psmc1,LOC108443803,LOC108428647 coding upstream 262693 20380834 ~ 20390529 (+)
trnae-uuc_8 NA coding upstream 321081 20332070 ~ 20332141 (+)
ilvbl ilvbl,LOC107669134,LOC107758073,LOC107753009,LOC107670636 coding downstream 1428 20664082 ~ 20677515 (+)
LOC113524750 NA coding downstream 46839 20709493 ~ 20739766 (+)
LOC113525592 LOC108258243,LOC108262145 coding downstream 310770 20973424 ~ 20980564 (+)
glrx5 glrx5 coding downstream 357486 21020140 ~ 21024532 (+)
LOC117599778 NA coding downstream 359607 21022261 ~ 21023055 (+)
G298666 NA non-coding upstream 22659 20616808 ~ 20630563 (+)
G298661 NA non-coding upstream 27020 20601129 ~ 20626202 (+)
G298662 NA non-coding upstream 42758 20607977 ~ 20610464 (+)
G298664 NA non-coding upstream 45426 20546844 ~ 20607796 (+)
G298645 NA non-coding upstream 101703 20512931 ~ 20551519 (+)
LOC117599708 NA non-coding downstream 88230 20750884 ~ 20757627 (+)
G298933 NA non-coding downstream 287187 20949841 ~ 20950068 (+)
G298936 NA non-coding downstream 294821 20957475 ~ 20959579 (+)
G298941 LOC108258028,LOC108262145 non-coding downstream 326831 20989485 ~ 20997752 (+)
G298950 NA non-coding downstream 366709 21029363 ~ 21037912 (+)
LOC117599696 NA other upstream 568725 20082506 ~ 20084497 (+)
G298409 NA other upstream 1106488 19401549 ~ 19546734 (+)
G298379 NA other upstream 1362683 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 1515609 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 2125023 18495675 ~ 18528199 (+)
flrt2 flrt2,LOC108258011 other downstream 163035 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 670611 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1045704 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1088912 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 1303671 21966325 ~ 21972928 (+)

Expression


Co-expression Network