LOC117599708


Basic Information

Item Value
gene id LOC117599708
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20750884 ~ 20757627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580088.1
cagaaacCCTCatagtaatggttttaatggttttaatgggaattgtattggtttaaaTAGAAACTCTAATGGTCTCTGTGgctctctactgGCAGCGTGCATCACGGGACACATTCTCTTTGGCATCCTGTAGGAGGTATGAAGTAAAAGTTTTCACCCAAACGTTTCCTGTTAACATTGAGCAAAGTTTGCTCTGTTTTGGGGTATCTGGGTCACATGACCTGGTTCGAGTTACCTGAGATCATTTCCTGACCAGAATCCATCATGGCCGCCGAAGGTGCAGGAGATTCCGAGCACGTGGAAACAGATGATGTGCTCTCATTGTGATGGAGATGGCAATAAGGCCGAGTCGACGCTCACATACTGATGTGTTTAtctgaaaaggaaaagaggTGAAGAGGACACAGCTATGCGAGAGAGCCTTCTGGATTGTCTGGCAGAAGTTATAGTGAATGTAACTCGCACCTCCAGGTGTACAGAGTGACAGACTGAATGGACAATGTTCAGGTTCTCAGTCGTAGAGGCAGCGAGAAGCTGTGGCTAGAAGGCAGTCGCTGCCTGTCATGGCAGTAACCCCAGGATGCGTGGACCAGGGCTCAGGGAAGCTGTAAAGTTGAAGAAGGAGGACCTCCAGGGTCACAGAAAGCTCCACTGGTTCGGAGGAGAGCCAGAAGTGCAAGCTCAGGCCTGGGAGGAGTTTGGAAAGGCggtgaaaaaaactttttggcCTAAAAAGAAGCAGACAAGCAGACATGCTCTACTGGGGATGAAAAGAGCACTCTGAGAATCTCCTTAATCCAGTGGATTTGGTCTCCATTTAGGAGGCAGCGCCAGACATCTCTAGTGTTTtgattctcaagaaggcaacatgatacattaagagccaggatgatcggtgtaaattgttattattttctcttctgggaaacatgtaaatatcttctGTAGCATCTGAAGAGCAgtagtaaatgaaaaaaataagatctttaaacaaaatattaattttcaccgatcatcctgtttataagtttac
>XR_004580089.1
cagaaacCCTCatagtaatggttttaatggttttaatgggaattgtattggtttaaaTAGAAACTCTAATGGTCTCTGTGgctctctactgGCAGCGTGCATCACGGGACACATTCTCTTTGGCATCCTGTAGGAGGTATGAAGTAAAAGTTTTCACCCAAACGTTTCCTGTTAACATTGAGCAAAGTTTGCTCTGTTTTGGGGTATCTGGGTCACATGACCTGGTTCGAGTTACCTGAGATCATTTCCTGACCAGAATCCATCATGGCCGCCGAAGGTGCAGGAGATTCCGAGCACGTGattttggaacattttgtgTGTCTCAGAATACGAGCATGACTTCATTTTGGCACGTGAGGTTTCCTGAGATGTCTGCGTTGTATCGCAGGAAACAGATGATGTGCTCTCATTGTGATGGAGATGGCAATAAGGCCGAGTCGACGCTCACATACTGATGTGTTTAtctgaaaaggaaaagaggTGAAGAGGACACAGCTATGCGAGAGAGCCTTCTGGATTGTCTGGCAGAAGTTATAGTGAATGTAACTCGCACCTCCAGGTGTACAGAGTGACAGACTGAATGGACAATGTTCAGGTTCTCAGTCGTAGAGGCAGCGAGAAGCTGTGGCTAGAAGGCAGTCGCTGCCTGTCATGGCAGTAACCCCAGGATGCGTGGACCAGGGCTCAGGGAAGCTGTAAAGTTGAAGAAGGAGGACCTCCAGGGTCACAGAAAGCTCCACTGGTTCGGAGGAGAGCCAGAAGTGCAAGCTCAGGCCTGGGAGGAGTTTGGAAAGGCggtgaaaaaaactttttggcCTAAAAAGAAGCAGACAAGCAGACATGCTCTACTGGGGATGAAAAGAGCACTCTGAGAATCTCCTTAATCCAGTGGATTTGGTCTCCATTTAGGAGGCAGCGCCAGACATCTCTAGTGTTTtgattctcaagaaggcaacatgatacattaagagccaggatgatcggtgtaaattgttattattttctcttctgggaaacatgtaaatatcttctGTAGCATCTGAAGAGCAgtagtaaatgaaaaaaataagatctttaaacaaaatattaattttcaccgatcatcctgtttataagtttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580088.1 False 1033 lncRNA 0.45 4 20750884 20757627
XR_004580089.1 True 1121 lncRNA 0.45 4 20750884 20757627

Neighbor

gene id symbol gene type direction distance location
LOC113524750 NA coding upstream 11118 20709493 ~ 20739766 (+)
ilvbl ilvbl,LOC107669134,LOC107758073,LOC107753009,LOC107670636 coding upstream 73369 20664082 ~ 20677515 (+)
LOC113524745 LOC108258205 coding upstream 88230 20653222 ~ 20662654 (+)
LOC113526589 LOC108261292,LOC108263642,LOC108273545,LOC108268894,LOC108270753,LOC108257668,LOC108270747,LOC108273546 coding upstream 200562 20532126 ~ 20550322 (+)
LOC113524742 LOC108270753,LOC108273219,LOC108274210,LOC108257668 coding upstream 272574 20467697 ~ 20478310 (+)
LOC113525592 LOC108258243,LOC108262145 coding downstream 215797 20973424 ~ 20980564 (+)
glrx5 glrx5 coding downstream 262513 21020140 ~ 21024532 (+)
LOC117599778 NA coding downstream 264634 21022261 ~ 21023055 (+)
si:dkey-63b1.1 LOC108257663 coding downstream 323458 21081085 ~ 21086417 (+)
LOC113524821 NA coding downstream 501117 21258744 ~ 21259618 (+)
G298666 NA non-coding upstream 120321 20616808 ~ 20630563 (+)
G298661 NA non-coding upstream 124682 20601129 ~ 20626202 (+)
G298662 NA non-coding upstream 140420 20607977 ~ 20610464 (+)
G298664 NA non-coding upstream 143088 20546844 ~ 20607796 (+)
G298645 NA non-coding upstream 199365 20512931 ~ 20551519 (+)
G298933 NA non-coding downstream 192214 20949841 ~ 20950068 (+)
G298936 NA non-coding downstream 199848 20957475 ~ 20959579 (+)
G298941 LOC108258028,LOC108262145 non-coding downstream 231858 20989485 ~ 20997752 (+)
G298950 NA non-coding downstream 271736 21029363 ~ 21037912 (+)
G298953 NA non-coding downstream 313803 21071430 ~ 21071827 (+)
LOC117599696 NA other upstream 666387 20082506 ~ 20084497 (+)
G298409 NA other upstream 1204150 19401549 ~ 19546734 (+)
G298379 NA other upstream 1460345 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 1613271 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 2222685 18495675 ~ 18528199 (+)
flrt2 flrt2,LOC108258011 other downstream 68062 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 575638 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 950731 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 993939 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 1208698 21966325 ~ 21972928 (+)

Expression


Co-expression Network