G298666


Basic Information

Item Value
gene id G298666
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20616808 ~ 20630563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353737
AGACATAGCTTTCAGCTTCAGGCTCttccttttttatatatttctgttggTGCATGGGGCTGATGTCTCCCACAGAGCCTGATGTCCCTCCAACTGAATCTGTATGAGCTTCTGTTCGCACATCTCCACAAAGCTAATGACCAGAGAGGAGTAATAATTATTTAGCAAAAAAGTCAACACTATCCTGAGCATACTGTCTGAGGAGTCAATGATAACTTTTGGTTGGCTTGATTAGCAAGATAGCATGCAAGCTACCAGGGACAGAAACTGATTAACAGAACAAGAATCCCAAAGCCAGAAAGATCTGTtacttattaaacatttaaatcgACCCATGCCCAGATCTcacagagctgttttttttttttttgtatcaatCCATTATTGTAGAAGTTACAAGAGTGCTGAAATTACACTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353737 True 420 lncRNA 0.39 2 20616808 20630563

Neighbor

gene id symbol gene type direction distance location
LOC113526589 LOC108261292,LOC108263642,LOC108273545,LOC108268894,LOC108270753,LOC108257668,LOC108270747,LOC108273546 coding upstream 66486 20532126 ~ 20550322 (+)
LOC113524742 LOC108270753,LOC108273219,LOC108274210,LOC108257668 coding upstream 138498 20467697 ~ 20478310 (+)
trnas-uga_11 NA coding upstream 185965 20430762 ~ 20430843 (+)
LOC113524754 psmc1,LOC108443803,LOC108428647 coding upstream 226279 20380834 ~ 20390529 (+)
trnae-uuc_8 NA coding upstream 284667 20332070 ~ 20332141 (+)
LOC113524745 LOC108258205 coding downstream 22659 20653222 ~ 20662654 (+)
ilvbl ilvbl,LOC107669134,LOC107758073,LOC107753009,LOC107670636 coding downstream 33519 20664082 ~ 20677515 (+)
LOC113524750 NA coding downstream 78930 20709493 ~ 20739766 (+)
LOC113525592 LOC108258243,LOC108262145 coding downstream 342861 20973424 ~ 20980564 (+)
glrx5 glrx5 coding downstream 389577 21020140 ~ 21024532 (+)
G298662 NA non-coding upstream 6344 20607977 ~ 20610464 (+)
G298664 NA non-coding upstream 9012 20546844 ~ 20607796 (+)
G298645 NA non-coding upstream 65289 20512931 ~ 20551519 (+)
G298660 NA non-coding upstream 76941 20539362 ~ 20539867 (+)
LOC113524748 LOC108273219,LOC108270753,LOC108261257,LOC108261282,LOC108273546,LOC108273545,LOC108274210 non-coding upstream 103904 20511487 ~ 20512904 (+)
LOC117599708 NA non-coding downstream 120321 20750884 ~ 20757627 (+)
G298933 NA non-coding downstream 319278 20949841 ~ 20950068 (+)
G298936 NA non-coding downstream 326912 20957475 ~ 20959579 (+)
G298941 LOC108258028,LOC108262145 non-coding downstream 358922 20989485 ~ 20997752 (+)
G298950 NA non-coding downstream 398800 21029363 ~ 21037912 (+)
LOC117599696 NA other upstream 532311 20082506 ~ 20084497 (+)
G298409 NA other upstream 1070074 19401549 ~ 19546734 (+)
G298379 NA other upstream 1326269 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 1479195 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 2088609 18495675 ~ 18528199 (+)
flrt2 flrt2,LOC108258011 other downstream 195126 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 702702 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1077795 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1121003 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 1335762 21966325 ~ 21972928 (+)

Expression


Co-expression Network