LOC113524750


Basic Information

Item Value
gene id LOC113524750
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20709493 ~ 20739766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313608.1
GCTCCAGCAGGAGGCACTGTGAACACGAACCCTTGCCGTAAACTCACAACAGAAGAAGAGGAGATTCAGGATTTTTTGTTCCCCTCTCTGAGTGAGAAAAATCAACCTTTCACTGAGTGTATTAGTTTACAGTGGATTCTACAGTATGATCGCAGGCTCCTTTTCCAGAAACACCATCCTTTAGACCTTATAAGACCTTATAATGGAATCAGCAGAGGTTCAACTGTGCTCTGGTGAAAAACCTCCATGCCCTCCTGGTCCTGCTGGCTCACAGCTTTGTGGGAATGTGCAGACAGAAGTTTGTAAGGCTTCAGGTGGAGGCTCTGTGGAACACATCACCCCTGTGGACctccagaaaaatgtaaaaaaggaagaaagtgaAGATGAAGACTATCTCTGTGGAGTGCTGTCAGGCTCTGTGGGATACATCACACCTATGGACCAacagaatcatgtgaaaaaggAAGAACTTGAAGATGAAGACCATTTCTGTGATGGGACATCACACTCTGTGGAAAATATAGATGAACAGAATGGAGGATTTGAAAGAAAGCATGTAAAAAAGGAAGAGTCTGAAGATGAAGATTACCTCCGTGCAACGACAGCCTGGGACATGAACAGTGCCCAGGTACAAGTCTTCTCCTGCTCCTGGTGTTCACTTTCCTATACATCTCAAATTTACCTCTACAAACACATTAGAAGATGCCACTACGAGGAATATGACAGACTGCTACAATCAGGAGAGTTAAAAGATGAGAACCATATCACCACAATAAGCTCCAGTATTCAGCAAACAGTCTCTGTTACACTCGACATTAACACCTCTAATAAACAAATGGAGAAAGAAGTCTATtcctgctcacagtgtgggaagagttttagtAACCGGCGTAATCTCCGacgacaccagcgcattcacacaggagagaagccgtatcactgcacacagtgtgggaagagttttacaaAACACTATAATCTCCAAGTACACCAGCGCACTCACAATGGAGAAAAGCCGTACCATTGCtcagagtgtgggaagagttttattaGAAAGGGTGATCTCCAGCTACACCAGCGCAGCCACACAGGAGAAAAGCCGTATCGCTGCTTAGAGTGTGGCAAGAGTTTTTCAAAACACAGTAGTCTTCAGCGACATCAACGCATTCACTCTGGAGAAAAACCGTATCAGTGCTCATACTGTAGGAAGATGTTTATAGATAAAGGTAATCTCAACgtacaccagcgcattcacaatAGAGAGAAGTCGTATCgttgctcacagtgtgggaagagttttaatcagCAACGTCAGCTCAGAACACACTTGCatattcacacaggagaaaaacagTATCGCTGCTCCCAGTGCGAGAAGATGTTTACTGATAAACGCCATCTCAAAGTTCATCAGCGCATTCACAACGGAGaaaagccgtatcactgctcgcagtgtgggaagagttttaatcaaCTGAATAATCTTCAGAGACACTTGcatattcacacaggagagaagccgtattcctgctcacagtgtgggaagagttttaatcgACAGTGTAATCTCGATCTCCACCAGCGCATTCATACAGGAGAAAAGCCATATAACTGCTCGGAGTGTGGGAAGAGCTTTAATCAGCGGAGTCATCTTCAgcgacaccagcgcattcactcAGGAGAAAAGCTGTATCAGTGCTCATACTGTATGAAGATGTTTAGAGAGAAAGGTAGTCTCAAAATACATCAGCGCATTCACAGTGAAGAAAAGCCGTATCACTGtgcacagtgtgggaagagttttaatcaaCAGAGTCATCTCAAAAGACACTTGCATATTCACACAGGACAGAAGCCGTAtcagtgctcacagtgtgggaagagtttccATCAGAAGAGTAGTCTTGTACAACACCAACACATTCACGGATCTGTAGAACGTTTTCAGGATCGCTGGGGAGACTCTGAATTTCCTCAGCAGTCTCAGATGGTAGAACCACTGTCTGGCTTTGTTCACCTGAGCTTGAATGTGATGAGTCCAGGTCAGGCCCTCAGAGATGTGTACTCCAAGCTTTGTGGGGGTGTGCAGACAGAAGTTTGTAAGGCTTCAGGTGGAGGCTCTGTGGAACACATCACCCCTGTGGACcttcacaaaaatgtaaaaaaggaagaaaatgaagatAAAGACTATCTCTGTGAAGTGCTATCTGACTCTATGGGATACATCACACCTGTGGACCAacagaatcatgtgaaaaaagaagaacctgAAAATGAAGAATATCTCTGTGATGGGATATCAAACTCTGTGGAAAATGTAGACCAACAGAATGGAGGAATTGAAAGGAAGCACATAAAAGAGGAAGAATCTGAAGATGAAGACTACCTCTGTAGAAGGACAGACTGGGAAATGAATGATGCCCAGGTACAAGTCTTCTTCTGCTCCTCGTGTTCACTTTCCTATACATCTCAAATTTACCTCCACAAACACATCAGAAGATGCCACTATGAGGAATACGAGAGACTGATAAAATCAGGAGAGATAAAATATGAGAACGTTACATCCACAAGAAGCTCCAGTATTCAGCAGACAATCTCTGGTATTCGCAATAGTAACACCTCTGATCAGCAAATGGAGAAAGTCTATCCCTGCTCTCAATGTGGGAGGAGTTTTACTGACCAGAGTAATCTCAGACGACACCAgaacattcacacaggagagaagccgtatcactgctcacagtgtgggaagagttttgccCAACACTATAATCTCCAACGACACCAgtgcattcacacaggagaaaagttgtatcactgctcagagtgtggTAAGAGTTTCATTCGACAGAGTAATCTCCAACTACATCAACGCATTCACACAGGATTAAAGCCATATCACTGCTCAGAATGTGGTAAGAGTTTCATTCGACAGGGAAATCTCCAActacaccagcgcattcacacaggagagaagccgtatcactgctcacagtgtgggaagactTTTTCCCAACACAATAATCTACAgcgacaccagcgcattcatTCAGGAGAAAAGCCATATgagtgctcacagtgtgggaagacgTTTACAGAAAAAGGTAACCTCAAAATACATCAGCGCATTCACAATGGAGAAAAGCCGTATCgttgctcacagtgtgggaagagttttaatcaaCAGAGTCATCTCAAAACACACTTGCatattcacacaggagaaaagccgtatcagtgctcacagtgtgggaagatgTTTACAGATAAAGGTAATCTCAAAGTTCATCAGCGCATTCACAATGGAGAAAAGCCATATCACTGCTcgcagtgtgggaagagttttaatcagCAGAGTAATCTCAAAACACACTTGCatattcacacaggagaaaagccgtatcagtgctcacagtgtgggaagacgTTTACAGATAAAGGTAATCTCAAAGTTCATCAGCGCATTCACAATGGAGaaaagccgtatcactgcttgcagtgtgggaagagttttaatcagCAGAGTAATCTCATacaacaccagcgcATTCACACAGGAgtgaagccgtatcactgctcacagtgtgagAAGAGTTTTATTCGAAAATATGATCTCCAAATACACCAGcgtattcacacaggagagaaaccgtatCCCTGCTCAgaatgtgggaagagttttattcGAAATTGTGATCTCCAAATACACCAGCGCATCcatacaggagagaagccgtatcgctgctcagagtgtgggaagagttttaatcaaCAGAGCCATCTCCAAacacacttgcacattcatacaggagagaaaccgtatCCCTGCTtgcagtgtgggaagagttttattcGACGGAATGATCTTCAAATACACCAGCACATTCACACCggagagaagccatatcactgctcactgtgtgggaagagttttattcGACAGGGTGAGCTCCAAATacatcagcgcattcacacaggagagaagccgtatgcCTGCATACAGTGTGGCAAGACTTTTACCCAACACAGTAATCTTCTACGACACCAGCgtgttcacacaggagagaggccatatcactgctcacagtgtgggaagagttttgccCAACATGGGAAGCTCCAACAACATCAGCGCATCCACAATAGGGAAAAGCTGCATCACTGCTcggagtgtgggaagagttttaatcaaCAGAGAAATCTCAAACATCACCAGTGCATTCACATAGCAGAAAAACTGATTTGATATTCACAGTGTGGATGGAGATTTACTTATCCAAGTGAATTTTAATACAAAAGTGCTCCAAGATTAAGTCTTGTGATGTGTGATATCTTGAAAGCACTGAATAAGCTGCGCTTCTAATTtgcttaaaatatataaataaatgtatttattgtgtatgtACAATATATTAGTATATCATGTACGTATACAGTAAACAAACTGTTTGTTGGAAGCAAATCTTGCCTTGTCAGGGTGCTCTCATTTCTTCTGTAAGGAATTACAGAGTCTACCATAAAAGTAAGTTTTGATCTGGTATAATCTGAACTGGGTTCCCTTCTCGCATGCCACAAGGCTGATAAGCTGTAACTGCAAATGGCCCAGTCAGCATAGCTACAAAGAAAGATCCTCATGTTTGACACCACCTTTACACTTATGCTGGAAAGTATGGCAGTCATAATATAAGAATAGGAGAACAATAatcccatcctgatgcccttcTCCTGCGTAGAGTTTTCATCACCggaaaatcactcgctgctgctaaGGATGGCtgcacatggacagcctaaagatcaccatgggATTACTGAGGATGGCACCACATAGGAACcgtaaagatggctgtggatgttcttccttaggactgcaattgctaagaacagtttgcacTCCAGTCTCCGTCACTGACCAGTAAATAACTTCAGTTTGCTACAACAGACTTAAAAttgaaactataatgaattcagagaTGAGACTGATGCTTATACTTAAGTTCGTGTTAAAACAGTTAGTACTTTTTTTGAATATATAGTATacttatagaagagaaattatttataatcgcactatctggtgtcacccggatgaggatgagttcccttttgagtctgtttcccc

Function

GO: NA

KEGG:

id description
K09228 KRAB; KRAB domain-containing zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313608.1 True 5122 mRNA 0.43 12 20709493 20739766

Neighbor

gene id symbol gene type direction distance location
ilvbl ilvbl,LOC107669134,LOC107758073,LOC107753009,LOC107670636 coding upstream 31978 20664082 ~ 20677515 (+)
LOC113524745 LOC108258205 coding upstream 46839 20653222 ~ 20662654 (+)
LOC113526589 LOC108261292,LOC108263642,LOC108273545,LOC108268894,LOC108270753,LOC108257668,LOC108270747,LOC108273546 coding upstream 159171 20532126 ~ 20550322 (+)
LOC113524742 LOC108270753,LOC108273219,LOC108274210,LOC108257668 coding upstream 231183 20467697 ~ 20478310 (+)
trnas-uga_11 NA coding upstream 278650 20430762 ~ 20430843 (+)
LOC113525592 LOC108258243,LOC108262145 coding downstream 233658 20973424 ~ 20980564 (+)
glrx5 glrx5 coding downstream 280374 21020140 ~ 21024532 (+)
LOC117599778 NA coding downstream 282495 21022261 ~ 21023055 (+)
si:dkey-63b1.1 LOC108257663 coding downstream 341319 21081085 ~ 21086417 (+)
LOC113524821 NA coding downstream 518978 21258744 ~ 21259618 (+)
G298666 NA non-coding upstream 78930 20616808 ~ 20630563 (+)
G298661 NA non-coding upstream 83291 20601129 ~ 20626202 (+)
G298662 NA non-coding upstream 99029 20607977 ~ 20610464 (+)
G298664 NA non-coding upstream 101697 20546844 ~ 20607796 (+)
G298660 NA non-coding upstream 169626 20539362 ~ 20539867 (+)
LOC117599708 NA non-coding downstream 11118 20750884 ~ 20757627 (+)
G298933 NA non-coding downstream 210075 20949841 ~ 20950068 (+)
G298936 NA non-coding downstream 217709 20957475 ~ 20959579 (+)
G298941 LOC108258028,LOC108262145 non-coding downstream 249719 20989485 ~ 20997752 (+)
G298950 NA non-coding downstream 289597 21029363 ~ 21037912 (+)
LOC117599696 NA other upstream 624996 20082506 ~ 20084497 (+)
G298409 NA other upstream 1162759 19401549 ~ 19546734 (+)
G298379 NA other upstream 1418954 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 1571880 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 2181294 18495675 ~ 18528199 (+)
flrt2 flrt2,LOC108258011 other downstream 85923 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 593499 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 968592 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1011800 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 1226559 21966325 ~ 21972928 (+)

Expression


Co-expression Network