RNA id: XM_034313608.1


Basic Information

Item Value
RNA id XM_034313608.1
length 5122
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC113524750
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20709493 ~ 20739766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCAGCAGGAGGCACTGTGAACACGAACCCTTGCCGTAAACTCACAACAGAAGAAGAGGAGATTCAGGATTTTTTGTTCCCCTCTCTGAGTGAGAAAAATCAACCTTTCACTGAGTGTATTAGTTTACAGTGGATTCTACAGTATGATCGCAGGCTCCTTTTCCAGAAACACCATCCTTTAGACCTTATAAGACCTTATAATGGAATCAGCAGAGGTTCAACTGTGCTCTGGTGAAAAACCTCCATGCCCTCCTGGTCCTGCTGGCTCACAGCTTTGTGGGAATGTGCAGACAGAAGTTTGTAAGGCTTCAGGTGGAGGCTCTGTGGAACACATCACCCCTGTGGACctccagaaaaatgtaaaaaaggaagaaagtgaAGATGAAGACTATCTCTGTGGAGTGCTGTCAGGCTCTGTGGGATACATCACACCTATGGACCAacagaatcatgtgaaaaaggAAGAACTTGAAGATGAAGACCATTTCTGTGATGGGACATCACACTCTGTGGAAAATATAGATGAACAGAATGGAGGATTTGAAAGAAAGCATGTAAAAAAGGAAGAGTCTGAAGATGAAGATTACCTCCGTGCAACGACAGCCTGGGACATGAACAGTGCCCAGGTACAAGTCTTCTCCTGCTCCTGGTGTTCACTTTCCTATACATCTCAAATTTACCTCTACAAACACATTAGAAGATGCCACTACGAGGAATATGACAGACTGCTACAATCAGGAGAGTTAAAAGATGAGAACCATATCACCACAATAAGCTCCAGTATTCAGCAAACAGTCTCTGTTACACTCGACATTAACACCTCTAATAAACAAATGGAGAAAGAAGTCTATtcctgctcacagtgtgggaagagttttagtAACCGGCGTAATCTCCGacgacaccagcgcattcacacaggagagaagccgtatcactgcacacagtgtgggaagagttttacaaAACACTATAATCTCCAAGTACACCAGCGCACTCACAATGGAGAAAAGCCGTACCATTGCtcagagtgtgggaagagttttattaGAAAGGGTGATCTCCAGCTACACCAGCGCAGCCACACAGGAGAAAAGCCGTATCGCTGCTTAGAGTGTGGCAAGAGTTTTTCAAAACACAGTAGTCTTCAGCGACATCAACGCATTCACTCTGGAGAAAAACCGTATCAGTGCTCATACTGTAGGAAGATGTTTATAGATAAAGGTAATCTCAACgtacaccagcgcattcacaatAGAGAGAAGTCGTATCgttgctcacagtgtgggaagagttttaatcagCAACGTCAGCTCAGAACACACTTGCatattcacacaggagaaaaacagTATCGCTGCTCCCAGTGCGAGAAGATGTTTACTGATAAACGCCATCTCAAAGTTCATCAGCGCATTCACAACGGAGaaaagccgtatcactgctcgcagtgtgggaagagttttaatcaaCTGAATAATCTTCAGAGACACTTGcatattcacacaggagagaagccgtattcctgctcacagtgtgggaagagttttaatcgACAGTGTAATCTCGATCTCCACCAGCGCATTCATACAGGAGAAAAGCCATATAACTGCTCGGAGTGTGGGAAGAGCTTTAATCAGCGGAGTCATCTTCAgcgacaccagcgcattcactcAGGAGAAAAGCTGTATCAGTGCTCATACTGTATGAAGATGTTTAGAGAGAAAGGTAGTCTCAAAATACATCAGCGCATTCACAGTGAAGAAAAGCCGTATCACTGtgcacagtgtgggaagagttttaatcaaCAGAGTCATCTCAAAAGACACTTGCATATTCACACAGGACAGAAGCCGTAtcagtgctcacagtgtgggaagagtttccATCAGAAGAGTAGTCTTGTACAACACCAACACATTCACGGATCTGTAGAACGTTTTCAGGATCGCTGGGGAGACTCTGAATTTCCTCAGCAGTCTCAGATGGTAGAACCACTGTCTGGCTTTGTTCACCTGAGCTTGAATGTGATGAGTCCAGGTCAGGCCCTCAGAGATGTGTACTCCAAGCTTTGTGGGGGTGTGCAGACAGAAGTTTGTAAGGCTTCAGGTGGAGGCTCTGTGGAACACATCACCCCTGTGGACcttcacaaaaatgtaaaaaaggaagaaaatgaagatAAAGACTATCTCTGTGAAGTGCTATCTGACTCTATGGGATACATCACACCTGTGGACCAacagaatcatgtgaaaaaagaagaacctgAAAATGAAGAATATCTCTGTGATGGGATATCAAACTCTGTGGAAAATGTAGACCAACAGAATGGAGGAATTGAAAGGAAGCACATAAAAGAGGAAGAATCTGAAGATGAAGACTACCTCTGTAGAAGGACAGACTGGGAAATGAATGATGCCCAGGTACAAGTCTTCTTCTGCTCCTCGTGTTCACTTTCCTATACATCTCAAATTTACCTCCACAAACACATCAGAAGATGCCACTATGAGGAATACGAGAGACTGATAAAATCAGGAGAGATAAAATATGAGAACGTTACATCCACAAGAAGCTCCAGTATTCAGCAGACAATCTCTGGTATTCGCAATAGTAACACCTCTGATCAGCAAATGGAGAAAGTCTATCCCTGCTCTCAATGTGGGAGGAGTTTTACTGACCAGAGTAATCTCAGACGACACCAgaacattcacacaggagagaagccgtatcactgctcacagtgtgggaagagttttgccCAACACTATAATCTCCAACGACACCAgtgcattcacacaggagaaaagttgtatcactgctcagagtgtggTAAGAGTTTCATTCGACAGAGTAATCTCCAACTACATCAACGCATTCACACAGGATTAAAGCCATATCACTGCTCAGAATGTGGTAAGAGTTTCATTCGACAGGGAAATCTCCAActacaccagcgcattcacacaggagagaagccgtatcactgctcacagtgtgggaagactTTTTCCCAACACAATAATCTACAgcgacaccagcgcattcatTCAGGAGAAAAGCCATATgagtgctcacagtgtgggaagacgTTTACAGAAAAAGGTAACCTCAAAATACATCAGCGCATTCACAATGGAGAAAAGCCGTATCgttgctcacagtgtgggaagagttttaatcaaCAGAGTCATCTCAAAACACACTTGCatattcacacaggagaaaagccgtatcagtgctcacagtgtgggaagatgTTTACAGATAAAGGTAATCTCAAAGTTCATCAGCGCATTCACAATGGAGAAAAGCCATATCACTGCTcgcagtgtgggaagagttttaatcagCAGAGTAATCTCAAAACACACTTGCatattcacacaggagaaaagccgtatcagtgctcacagtgtgggaagacgTTTACAGATAAAGGTAATCTCAAAGTTCATCAGCGCATTCACAATGGAGaaaagccgtatcactgcttgcagtgtgggaagagttttaatcagCAGAGTAATCTCATacaacaccagcgcATTCACACAGGAgtgaagccgtatcactgctcacagtgtgagAAGAGTTTTATTCGAAAATATGATCTCCAAATACACCAGcgtattcacacaggagagaaaccgtatCCCTGCTCAgaatgtgggaagagttttattcGAAATTGTGATCTCCAAATACACCAGCGCATCcatacaggagagaagccgtatcgctgctcagagtgtgggaagagttttaatcaaCAGAGCCATCTCCAAacacacttgcacattcatacaggagagaaaccgtatCCCTGCTtgcagtgtgggaagagttttattcGACGGAATGATCTTCAAATACACCAGCACATTCACACCggagagaagccatatcactgctcactgtgtgggaagagttttattcGACAGGGTGAGCTCCAAATacatcagcgcattcacacaggagagaagccgtatgcCTGCATACAGTGTGGCAAGACTTTTACCCAACACAGTAATCTTCTACGACACCAGCgtgttcacacaggagagaggccatatcactgctcacagtgtgggaagagttttgccCAACATGGGAAGCTCCAACAACATCAGCGCATCCACAATAGGGAAAAGCTGCATCACTGCTcggagtgtgggaagagttttaatcaaCAGAGAAATCTCAAACATCACCAGTGCATTCACATAGCAGAAAAACTGATTTGATATTCACAGTGTGGATGGAGATTTACTTATCCAAGTGAATTTTAATACAAAAGTGCTCCAAGATTAAGTCTTGTGATGTGTGATATCTTGAAAGCACTGAATAAGCTGCGCTTCTAATTtgcttaaaatatataaataaatgtatttattgtgtatgtACAATATATTAGTATATCATGTACGTATACAGTAAACAAACTGTTTGTTGGAAGCAAATCTTGCCTTGTCAGGGTGCTCTCATTTCTTCTGTAAGGAATTACAGAGTCTACCATAAAAGTAAGTTTTGATCTGGTATAATCTGAACTGGGTTCCCTTCTCGCATGCCACAAGGCTGATAAGCTGTAACTGCAAATGGCCCAGTCAGCATAGCTACAAAGAAAGATCCTCATGTTTGACACCACCTTTACACTTATGCTGGAAAGTATGGCAGTCATAATATAAGAATAGGAGAACAATAatcccatcctgatgcccttcTCCTGCGTAGAGTTTTCATCACCggaaaatcactcgctgctgctaaGGATGGCtgcacatggacagcctaaagatcaccatgggATTACTGAGGATGGCACCACATAGGAACcgtaaagatggctgtggatgttcttccttaggactgcaattgctaagaacagtttgcacTCCAGTCTCCGTCACTGACCAGTAAATAACTTCAGTTTGCTACAACAGACTTAAAAttgaaactataatgaattcagagaTGAGACTGATGCTTATACTTAAGTTCGTGTTAAAACAGTTAGTACTTTTTTTGAATATATAGTATacttatagaagagaaattatttataatcgcactatctggtgtcacccggatgaggatgagttcccttttgagtctgtttcccc

Function

GO: NA

KEGG:

id description
K09228 KRAB; KRAB domain-containing zinc finger protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353737 lncRNA upstream 78930 20616808 ~ 20630563 (+) True G298666
TU353730 lncRNA upstream 83291 20601129 ~ 20626202 (+) False G298661
TU353731 lncRNA upstream 83291 20601129 ~ 20626202 (+) True G298661
TU353732 lncRNA upstream 99029 20607977 ~ 20610464 (+) True G298662
TU353734 lncRNA upstream 101697 20546844 ~ 20607796 (+) True G298664
XR_004580089.1 lncRNA downstream 11118 20750884 ~ 20757627 (+) True LOC117599708
XR_004580088.1 lncRNA downstream 11118 20750884 ~ 20757627 (+) False LOC117599708
TU353826 lncRNA downstream 85928 20825694 ~ 20838598 (+) False flrt2
TU353829 lncRNA downstream 85928 20825694 ~ 20838565 (+) False flrt2
TU354113 lncRNA downstream 210075 20949841 ~ 20950068 (+) True G298933
XM_026911099.2 mRNA upstream 31978 20664082 ~ 20677515 (+) True ilvbl
XM_034313537.1 mRNA upstream 46839 20656114 ~ 20662654 (+) False LOC113524745
XM_034313538.1 mRNA upstream 46839 20656421 ~ 20662654 (+) False LOC113524745
XM_026911101.2 mRNA upstream 46842 20653222 ~ 20662651 (+) False LOC113524745
XM_026911100.2 mRNA upstream 46843 20653236 ~ 20662650 (+) True LOC113524745
XM_026911121.2 mRNA downstream 85923 20825689 ~ 20838690 (+) True flrt2
XM_034313948.1 mRNA downstream 233658 20973424 ~ 20980564 (+) False LOC113525592
XM_026912151.2 mRNA downstream 236927 20976693 ~ 20980564 (+) True LOC113525592
XM_026911169.2 mRNA downstream 280374 21020140 ~ 21024532 (+) True glrx5
XM_026911184.2 mRNA downstream 341319 21081085 ~ 21086417 (+) True si:dkey-63b1.1
trnas-uga_11 other upstream 278650 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 377352 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 380730 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 382522 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 386433 20322989 ~ 20323060 (+) True trnah-gug_17
XR_004580149.1 other downstream 282495 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 593499 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 764437 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 797881 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 841118 21580884 ~ 21580955 (+) True trnag-ucc_27

Expression Profile