RNA id: TU354113


Basic Information

Item Value
RNA id TU354113
length 228
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G298933
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20949841 ~ 20950068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaccttttcatagtacctgaactaattgtggaactacccactttttggcgttttcgcacctccggaactgggtgtgattttagtaccgactgcctttttcgagaaccagatgagctcctactccggagcagggtctaacctctaacaactggtactatccgtgacgtaagtagatgttgattggccaaacgcgtacgaaaacgccctcacccgccatgatttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353826 lncRNA upstream 111243 20825694 ~ 20838598 (+) False flrt2
TU353829 lncRNA upstream 111276 20825694 ~ 20838565 (+) False flrt2
XR_004580089.1 lncRNA upstream 192214 20750884 ~ 20757627 (+) True LOC117599708
XR_004580088.1 lncRNA upstream 192214 20750884 ~ 20757627 (+) False LOC117599708
TU353737 lncRNA upstream 319278 20616808 ~ 20630563 (+) True G298666
TU354116 lncRNA downstream 7407 20957475 ~ 20959579 (+) True G298936
TU354126 lncRNA downstream 39417 20989485 ~ 20997752 (+) False G298941
TU354128 lncRNA downstream 39417 20989485 ~ 20997752 (+) False G298941
TU354135 lncRNA downstream 39417 20989485 ~ 20997752 (+) False G298941
TU354124 lncRNA downstream 45623 20995691 ~ 20997752 (+) True G298941
XM_026911121.2 mRNA upstream 111151 20825689 ~ 20838690 (+) True flrt2
XM_034313608.1 mRNA upstream 210075 20709493 ~ 20739766 (+) True LOC113524750
XM_026911099.2 mRNA upstream 272326 20664082 ~ 20677515 (+) True ilvbl
XM_034313537.1 mRNA upstream 287187 20656114 ~ 20662654 (+) False LOC113524745
XM_034313538.1 mRNA upstream 287187 20656421 ~ 20662654 (+) False LOC113524745
XM_034313948.1 mRNA downstream 23356 20973424 ~ 20980564 (+) False LOC113525592
XM_026912151.2 mRNA downstream 26625 20976693 ~ 20980564 (+) True LOC113525592
XM_026911169.2 mRNA downstream 70072 21020140 ~ 21024532 (+) True glrx5
XM_026911184.2 mRNA downstream 131017 21081085 ~ 21086417 (+) True si:dkey-63b1.1
XM_034313706.1 mRNA downstream 308676 21258744 ~ 21259618 (+) True LOC113524821
trnas-uga_11 other upstream 518998 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 617700 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 621078 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 622870 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 626781 20322989 ~ 20323060 (+) True trnah-gug_17
XR_004580149.1 other downstream 72193 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 383197 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 554135 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 587579 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 630816 21580884 ~ 21580955 (+) True trnag-ucc_27

Expression Profile