RNA id: trnar-acg_14


Basic Information

Item Value
RNA id trnar-acg_14
length 73
RNA type tRNA
GC content 0.58
exon number 1
gene id trnar-acg_14
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20328691 ~ 20328763 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCCAGTGGCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353641 lncRNA upstream 33538 20279494 ~ 20295153 (+) False G298586
TU353640 lncRNA upstream 33538 20291845 ~ 20295153 (+) True G298586
TU353628 lncRNA upstream 91372 20236844 ~ 20237319 (+) True G298576
TU353531 lncRNA upstream 137883 20183311 ~ 20190808 (+) True G298511
TU353514 lncRNA upstream 374538 19900968 ~ 19954153 (+) True G298494
TU353659 lncRNA downstream 29297 20358060 ~ 20358322 (+) True G298602
TU353660 lncRNA downstream 30143 20358906 ~ 20359754 (+) True G298603
TU353665 lncRNA downstream 38371 20367134 ~ 20367364 (+) True G298608
XR_004580090.1 lncRNA downstream 182724 20511487 ~ 20512904 (+) True LOC113524748
TU353708 lncRNA downstream 184168 20512931 ~ 20551519 (+) True G298645
XM_026911090.2 mRNA upstream 56442 20265105 ~ 20272249 (+) True LOC113524740
XM_034313604.1 mRNA upstream 80741 20238319 ~ 20247950 (+) True LOC113524757
XM_034313556.1 mRNA upstream 244194 20082506 ~ 20084497 (+) True LOC117599696
XM_034313551.1 mRNA upstream 287512 20039501 ~ 20041179 (+) True LOC117599693
XM_034313539.1 mRNA downstream 52071 20380834 ~ 20390529 (+) True LOC113524754
XM_034313605.1 mRNA downstream 138934 20467697 ~ 20478310 (+) True LOC113524742
XM_034313531.1 mRNA downstream 203363 20532126 ~ 20550322 (+) True LOC113526589
XM_034313532.1 mRNA downstream 203363 20532126 ~ 20550322 (+) False LOC113526589
XM_034313533.1 mRNA downstream 203363 20532126 ~ 20550322 (+) False LOC113526589
trnah-gug_18 other upstream 1720 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 5631 20322989 ~ 20323060 (+) True trnah-gug_17
trnae-uuc_7 other upstream 6300 20322320 ~ 20322391 (+) True trnae-uuc_7
trnar-acg_13 other upstream 6529 20322090 ~ 20322162 (+) True trnar-acg_13
trnah-gug_16 other upstream 7087 20321533 ~ 20321604 (+) True trnah-gug_16
trnae-uuc_8 other downstream 3307 20332070 ~ 20332141 (+) True trnae-uuc_8
trnas-uga_11 other downstream 101999 20430762 ~ 20430843 (+) True trnas-uga_11
XR_004580149.1 other downstream 693498 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 1004502 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 1175440 21504203 ~ 21504274 (+) True trnag-ucc_25