RNA id: XM_034313539.1


Basic Information

Item Value
RNA id XM_034313539.1
length 1590
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC113524754
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20380834 ~ 20390529 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAACGAACggctttattatttttgtcctgAGAGAGTATCCGTAGTCTGACGTATTTTGTAAGCGACGAGCGCCGGCAAACATGGGACAGAACCAGAGTGGAGGACATGGACCAGGTGGTGGGAAAAAGGATGACAAGgataagaagaagaaatacgAGCCGCCGATCCCTACGCGAGTcggcaagaagaagaaaaagaccaAAGGACCAGATGCAGCGAGCAAACTTCCTTTAGTGACTCCACACACTCAGTGCAGGCTGAAGCTGCTGAAGCAAGAGCGCATTAAAGATTACCTGCTGATGGAGGAGGAGTTCATCAGGAACCAGGAGCAGATGAAACCGCTGGAGGAGAAACAGGAGGAGGAGAGGTCGAAGGTCGATGACCTGAGAGGGACTCCAATGTCTGTGGGGAATCTGGAGGAGATAATTGACGATAATCACGCCATCGTGTCCACCTCGGTGGGCTCGGAGCACTATGTCAGCATCCTGTCTTTCGTGGATAAAGACCTGCTggagccgggctgctctgtgttgCTCAACCacaagGTCCACGCAGTCATCGGTGTGCTGATGGACGACACCGATCCTCTGGTGACGGTGATGAAGGTGGAAAAAGCTCCACAGGAGACGTACGCTGATATCGGAGGACTGGACACTCAGATCCAGGAGATCAAGGAGTCAGTCGAGctgcctctcacacacccaGAGTATTACGAGGAGATGGGCATTAAACCTCCTAAAGGAGTCATTCTGTACGGACCTCCCGGAACCGGTAAAACCCTCCTGGCCAAAGCGGTAGCCAATCAGACGTCAGCGACGTTCCTGCGTGTGGTGGGTTCGGAGCTGATCCAGAAGTACCTGGGCGACGGACCCAAACTGGTGCGCGAGCTTTTCAGAGTGGCAGAGGAACACGCGCCCTCCATCGTTTTCATCGACGAGATCGACGCCATCGGGACCAAGAGGTACGACTCGAACTCCGGCGGCGAGCGTGAGATCCAGAGGACGATGCTGGAGCTCCTCAATCAGCTGGACGGATTTGACTCTCGTGGAGATGTTAAAGTCATCATGGCCACGAACCGCATCGAAACACTCGACCCTGCgctcatcagaccagGTCGGATTGATCGGAAGATCGAGTTCCCTCTGCCGGACGAGAAGACCAAGAAAAGAATTTTCCAGATTCACACGAGCCGGATGACTCTGGCTGATGATGTCACCCTCGATGACCTCATCCTGGCGAAAGATGATCTCTCCGGAGCCGACATCAAGGCGATCTGCACCGAGGCTGGGCTCATGGCGCTCCGCGAGCGCAGGATGAAAGTCACTAATGAAGATTTTAAGAAGTCTAAAGAGAACGTGTTGTATAAGAAGCAGGAGGGAACTCCTGAAGGCTTGTACCTCtaacccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagcgcgagaatACATGAAACTGAATGGAAATGTCCAtttaagatgtgtttttttattatttatatatattttgttgttcTCCAGTGTGTCAGCACATTAAACGTGTGGAAGATAAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353665 lncRNA upstream 13470 20367134 ~ 20367364 (+) True G298608
TU353660 lncRNA upstream 21080 20358906 ~ 20359754 (+) True G298603
TU353659 lncRNA upstream 22512 20358060 ~ 20358322 (+) True G298602
TU353653 lncRNA upstream 42235 20310652 ~ 20338599 (+) True G298596
TU353641 lncRNA upstream 85681 20279494 ~ 20295153 (+) False G298586
XR_004580090.1 lncRNA downstream 120958 20511487 ~ 20512904 (+) True LOC113524748
TU353708 lncRNA downstream 122402 20512931 ~ 20551519 (+) True G298645
TU353729 lncRNA downstream 148833 20539362 ~ 20539867 (+) True G298660
TU353734 lncRNA downstream 156315 20546844 ~ 20607796 (+) True G298664
TU353730 lncRNA downstream 210600 20601129 ~ 20626202 (+) False G298661
XM_026911090.2 mRNA upstream 108585 20265105 ~ 20272249 (+) True LOC113524740
XM_034313604.1 mRNA upstream 132884 20238319 ~ 20247950 (+) True LOC113524757
XM_034313556.1 mRNA upstream 296337 20082506 ~ 20084497 (+) True LOC117599696
XM_034313551.1 mRNA upstream 339655 20039501 ~ 20041179 (+) True LOC117599693
XM_034313550.1 mRNA upstream 339655 20039501 ~ 20041179 (+) False LOC117599693
XM_034313605.1 mRNA downstream 77168 20467697 ~ 20478310 (+) True LOC113524742
XM_034313531.1 mRNA downstream 141597 20532126 ~ 20550322 (+) True LOC113526589
XM_034313532.1 mRNA downstream 141597 20532126 ~ 20550322 (+) False LOC113526589
XM_034313533.1 mRNA downstream 141597 20532126 ~ 20550322 (+) False LOC113526589
XM_026911101.2 mRNA downstream 262693 20653222 ~ 20662651 (+) False LOC113524745
trnae-uuc_8 other upstream 48693 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 52071 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 53863 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 57774 20322989 ~ 20323060 (+) True trnah-gug_17
trnae-uuc_7 other upstream 58443 20322320 ~ 20322391 (+) True trnae-uuc_7
trnas-uga_11 other downstream 40233 20430762 ~ 20430843 (+) True trnas-uga_11
XR_004580149.1 other downstream 631732 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 942736 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 1113674 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 1147118 21537647 ~ 21537718 (+) True trnag-ucc_26

Expression Profile