RNA id: XM_034313605.1


Basic Information

Item Value
RNA id XM_034313605.1
length 1767
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113524742
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20467697 ~ 20478310 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTTTGTGACGAcggtaaaataaaacatttccggagaaaaaacacagtaagtatctaaatctaaagctataatatgtAAACATGCTGAATTTACACTAGATGCAGAAcagttttttgggtttttactgaatttttaaCACACAAGTTGTTTTATGACTTGATAAGTTGGTGTTTTCCTGTAAATAAGTGTGTGctgatgttggagtgaagtaaacacTTGAAGTGTCttgctgtaatctggagaaggagacatggCCTCCAACAcgagtgtgtctggaaaacaggacttaaagaaagacgagacGATGATGAAGAGAAgtagatcagactcaccagaacccagctgtgtgtccatgaagagtgacaaGTCAATGGACCATCTGATTACCTTCAGTCATGGAGTATGTTCTAATGATCAGAGACcgcaaaaaaagaaatcaaccAAAAATCAGCTGGACTCCATATTCAAGgagctggaacacaaagtcatcactctgataaagaatgagctgaagaggtttaggaaACTCCTGAGtacagattacccagcatgcagtGAGACAGAGGGGGAGGATGATGAGGCTCTgtacagtgtcagagagggagcactgaagatcacactgcacgtcctaAAGagcatgaaccacacagatctcgctaaaacactgcagaacaagCTGGATCCGGTCTCTGAATATCAAGAAACACTCAAATCTAAGCTGGGAGAGAgatgtaaaagaattaatgaaggaatatcccagcatggaagctcaacacttctgaatgagatctacacagagctctacatcacagagggctggagtggagacgtcaataatgaacatgaggtgagacagattgagacagcgtccaggagaccagaaacacaggagacacccatcaaatgtaatgacctctttaaagacaagtccatcagaactgtgctgactaaaggagtcgctggaattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggacgtcaccttcatgtttccacttccctttagagagctgaatttgatgaagcaggaAAACCTCAGTCTGACAAaacttcttcatcactttttcccagaaatgagacAACTACAGTTATTAAATTGTGACACCTACAAAGCCATGttcatctttgatggtctggatgagtgtcgacttcctctaaatttccagagcaatgagagattgtgtgacgtgacagagtcagcctcaatggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagtcaatcagatccctcctgagtgtgtaggcCTTGTAACAGAGATAAGAGGGTTCaatgatcctcagaaagaggagtacttcagtaAGAGGATCACTGATCAGAgtctggccaataaaatcatcacacacatgaagtcttcaaggagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacactGTgcaggctgtgctgctctggcttcagctctgaggtcaaaccCCTCATCACGCCTGACAGAAATATATCTCTATGGCAATAAAACAgaagaatcaggagtgaagctgctgtCTGAACTTCTGAAGGATCCACAATTTAAATTGGAgaaactacagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353665 lncRNA upstream 100333 20367134 ~ 20367364 (+) True G298608
TU353660 lncRNA upstream 107943 20358906 ~ 20359754 (+) True G298603
TU353659 lncRNA upstream 109375 20358060 ~ 20358322 (+) True G298602
TU353653 lncRNA upstream 129098 20310652 ~ 20338599 (+) True G298596
TU353640 lncRNA upstream 172544 20291845 ~ 20295153 (+) True G298586
XR_004580090.1 lncRNA downstream 33177 20511487 ~ 20512904 (+) True LOC113524748
TU353708 lncRNA downstream 34621 20512931 ~ 20551519 (+) True G298645
TU353729 lncRNA downstream 61052 20539362 ~ 20539867 (+) True G298660
TU353734 lncRNA downstream 68534 20546844 ~ 20607796 (+) True G298664
TU353730 lncRNA downstream 122819 20601129 ~ 20626202 (+) False G298661
XM_034313539.1 mRNA upstream 77168 20380834 ~ 20390529 (+) True LOC113524754
XM_026911090.2 mRNA upstream 195448 20265105 ~ 20272249 (+) True LOC113524740
XM_034313604.1 mRNA upstream 219747 20238319 ~ 20247950 (+) True LOC113524757
XM_034313556.1 mRNA upstream 383200 20082506 ~ 20084497 (+) True LOC117599696
XM_034313551.1 mRNA upstream 426518 20039501 ~ 20041179 (+) True LOC117599693
XM_034313531.1 mRNA downstream 53816 20532126 ~ 20550322 (+) True LOC113526589
XM_034313532.1 mRNA downstream 53816 20532126 ~ 20550322 (+) False LOC113526589
XM_034313533.1 mRNA downstream 53816 20532126 ~ 20550322 (+) False LOC113526589
XM_026911101.2 mRNA downstream 174912 20653222 ~ 20662651 (+) False LOC113524745
XM_026911100.2 mRNA downstream 174926 20653236 ~ 20662650 (+) True LOC113524745
trnas-uga_11 other upstream 36854 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 135556 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 138934 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 140726 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 144637 20322989 ~ 20323060 (+) True trnah-gug_17
XR_004580149.1 other downstream 543951 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 854955 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 1025893 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 1059337 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 1102574 21580884 ~ 21580955 (+) True trnag-ucc_27

Expression Profile