RNA id: TU353729


Basic Information

Item Value
RNA id TU353729
length 217
lncRNA type intronic
GC content 0.29
exon number 2
gene id G298660
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20539362 ~ 20539867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acagtatgtataaacagtagtaaataaacggaatgtacaatataaacagtatgtataaacagtagtaaataaacggaatgtacagtataaacagtatgtataaacagtagtaaataaacagaatgtacagtataaacagtatgtataatcagtagtaaataaacaatgtacagttaaGAGCAGTTATGTACAGACAAGGGCAGTGAGAGATAAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580090.1 lncRNA upstream 26458 20511487 ~ 20512904 (+) True LOC113524748
TU353665 lncRNA upstream 171998 20367134 ~ 20367364 (+) True G298608
TU353660 lncRNA upstream 179608 20358906 ~ 20359754 (+) True G298603
TU353659 lncRNA upstream 181040 20358060 ~ 20358322 (+) True G298602
TU353653 lncRNA upstream 200763 20310652 ~ 20338599 (+) True G298596
TU353734 lncRNA downstream 6977 20546844 ~ 20607796 (+) True G298664
TU353730 lncRNA downstream 61262 20601129 ~ 20626202 (+) False G298661
TU353731 lncRNA downstream 61262 20601129 ~ 20626202 (+) True G298661
TU353732 lncRNA downstream 68110 20607977 ~ 20610464 (+) True G298662
TU353737 lncRNA downstream 76941 20616808 ~ 20630563 (+) True G298666
XM_034313605.1 mRNA upstream 61052 20467697 ~ 20478310 (+) True LOC113524742
XM_034313539.1 mRNA upstream 148833 20380834 ~ 20390529 (+) True LOC113524754
XM_026911090.2 mRNA upstream 267113 20265105 ~ 20272249 (+) True LOC113524740
XM_034313604.1 mRNA upstream 291412 20238319 ~ 20247950 (+) True LOC113524757
XM_034313556.1 mRNA upstream 454865 20082506 ~ 20084497 (+) True LOC117599696
XM_026911101.2 mRNA downstream 113355 20653222 ~ 20662651 (+) False LOC113524745
XM_026911100.2 mRNA downstream 113369 20653236 ~ 20662650 (+) True LOC113524745
XM_034313537.1 mRNA downstream 116247 20656114 ~ 20662654 (+) False LOC113524745
XM_034313538.1 mRNA downstream 116554 20656421 ~ 20662654 (+) False LOC113524745
XM_026911099.2 mRNA downstream 124215 20664082 ~ 20677515 (+) True ilvbl
trnas-uga_11 other upstream 108519 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 207221 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 210599 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 212391 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 216302 20322989 ~ 20323060 (+) True trnah-gug_17
XR_004580149.1 other downstream 482394 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 793398 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 964336 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 997780 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 1041017 21580884 ~ 21580955 (+) True trnag-ucc_27

Expression Profile