RNA id: TU353659


Basic Information

Item Value
RNA id TU353659
length 263
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G298602
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20358060 ~ 20358322 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAATTGTCATTACGTCTGAAAAACATCTCATGGGCGATGCACTGGTACATGTTCGGCCTGGGCTAGTGAGATATGGCTTCATGTCACTTTCCCACTGCACAGCTTCGAGGGAAGCAACAAGCAACTTCCCCACTGGAGAAGGGCTGTGGGATACAAACAATGGCCAAAGTACAAGAAGAACGTGGAAAGGCTATGCCGTGACCCGGATTCGAACCGGGGTTGCTGCGGCCACAACGCAGAGTACTAACCACTATACGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353653 lncRNA upstream 19461 20310652 ~ 20338599 (+) True G298596
TU353641 lncRNA upstream 62907 20279494 ~ 20295153 (+) False G298586
TU353640 lncRNA upstream 62907 20291845 ~ 20295153 (+) True G298586
TU353628 lncRNA upstream 120741 20236844 ~ 20237319 (+) True G298576
TU353531 lncRNA upstream 167252 20183311 ~ 20190808 (+) True G298511
TU353660 lncRNA downstream 584 20358906 ~ 20359754 (+) True G298603
TU353665 lncRNA downstream 8812 20367134 ~ 20367364 (+) True G298608
XR_004580090.1 lncRNA downstream 153165 20511487 ~ 20512904 (+) True LOC113524748
TU353708 lncRNA downstream 154609 20512931 ~ 20551519 (+) True G298645
TU353729 lncRNA downstream 181040 20539362 ~ 20539867 (+) True G298660
XM_026911090.2 mRNA upstream 85811 20265105 ~ 20272249 (+) True LOC113524740
XM_034313604.1 mRNA upstream 110110 20238319 ~ 20247950 (+) True LOC113524757
XM_034313556.1 mRNA upstream 273563 20082506 ~ 20084497 (+) True LOC117599696
XM_034313551.1 mRNA upstream 316881 20039501 ~ 20041179 (+) True LOC117599693
XM_034313539.1 mRNA downstream 22512 20380834 ~ 20390529 (+) True LOC113524754
XM_034313605.1 mRNA downstream 109375 20467697 ~ 20478310 (+) True LOC113524742
XM_034313531.1 mRNA downstream 173804 20532126 ~ 20550322 (+) True LOC113526589
XM_034313532.1 mRNA downstream 173804 20532126 ~ 20550322 (+) False LOC113526589
XM_034313533.1 mRNA downstream 173804 20532126 ~ 20550322 (+) False LOC113526589
trnae-uuc_8 other upstream 25919 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 29297 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 31089 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 35000 20322989 ~ 20323060 (+) True trnah-gug_17
trnae-uuc_7 other upstream 35669 20322320 ~ 20322391 (+) True trnae-uuc_7
trnas-uga_11 other downstream 72440 20430762 ~ 20430843 (+) True trnas-uga_11
XR_004580149.1 other downstream 663939 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 974943 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 1145881 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 1179325 21537647 ~ 21537718 (+) True trnag-ucc_26

Expression Profile