LOC117599693


Basic Information

Item Value
gene id LOC117599693
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20039501 ~ 20041179 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313550.1
GTTGTCTGAACAGGAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaTCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGAGTGgagaaaatgtttctataataTGTGACGACTTGTCcagtgataaaaataaattagtttggTTCAAACAGAGTTTTGGAAAGGTTCCTCAGTGGGTagggagaggaggggagagcTCATTCAGACCCGGTGAAGGATTTAATGATGGACGTTTCAGtattagtgtaaataaaaatttgcTTAATCTCaatattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCCGAATTGCTGGGATCTTCACTATACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACGGCATCCTCCGACTGTAACGGTGATAGAGAACGGAGAGTCACTCTCACTCCAGTGTTCAGTACAAGCATTTAATTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACGGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGACGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGATCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTACTAATCGAACTGGAGTTAAAGTAATTCAAGAAAAAGgGGCTTCCAATGACCATCCAGATAACACAAATCAGGCTGATGATGAAGATGTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGCGCCATGAAGATGTTTATGcacaagttaaaataaaataaagagaaatgaatgaattcagaTTTAAAAGCACCAGATGCTAAATATTTATTGCTGTAAGTCAAACATTATTTGGT
>XM_034313551.1
GTTGTCTGAACAGGAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaTCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGAGTGgagaaaatgtttctataataTGTGACGACTTGTCcagtgataaaaataaattagtttggTTCAAACAGAGTTTTGGAAAGGTTCCTCAGTGGGTagggagaggaggggagagcTCATTCAGACCCGGTGAAGGATTTAATGATGGACGTTTCAGtattagtgtaaataaaaatttgcTTAATCTCaatattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCCGAATTGCTGGGATCTTCACTATACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACGGCATCCTCCGACTGTAACGGTGATAGAGAACGGAGAGTCACTCTCACTCCAGTGTTCAGTACAAGCATTTAATTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACGGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGACGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGATCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTACTAATCGAACTGGAGTTAAAGTAATTCAAGAAAAAGAAAATAACCATcgcattgtttttgttttaacaacCTCCAATATAATATCTATTATTGTAATCATGGTTTTGGTTGGAGTTTTacttaaacaaagaaaaggGGCTTCCAATGACCATCCAGATAACACAAATCAGGCTGATGATGAAGATGTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGCGCCATGAAGATGTTTATGcacaagttaaaataaaataaagagaaatgaatgaattcagaTTTAAAAGCACCAGATGCTAAATATTTATTGCTGTAAGTCAAACATTATTTGGT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05150 Staphylococcus aureus infection
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313550.1 False 975 mRNA 0.41 5 20039501 20041179
XM_034313551.1 True 1074 mRNA 0.39 6 20039501 20041179

Neighbor

gene id symbol gene type direction distance location
LOC117599720 LOC108261534 coding upstream 39290 19998932 ~ 20000211 (+)
LOC113524723 LOC108261534 coding upstream 223436 19781161 ~ 19816065 (+)
LOC117599703 LOC108261534 coding upstream 247260 19790613 ~ 19792241 (+)
LOC117599690 NA coding upstream 256505 19764050 ~ 19782996 (+)
LOC117599681 LOC108261534 coding upstream 308227 19729615 ~ 19731274 (+)
LOC113524757 LOC108258230 coding downstream 197140 20238319 ~ 20247950 (+)
LOC113524740 psma6,LOC108258228,LOC108443807,LOC106935624,LOC103149670,LOC103457804,LOC108231735,LOC102217550,LOC103039316 coding downstream 223926 20265105 ~ 20272249 (+)
trnar-acg_10 NA coding downstream 248274 20289453 ~ 20289525 (+)
trnar-acg_11 NA coding downstream 248858 20290037 ~ 20290109 (+)
trnae-uuc_6 NA coding downstream 275166 20316345 ~ 20316416 (+)
G298494 NA non-coding upstream 85348 19900968 ~ 19954153 (+)
LOC117599710 NA non-coding upstream 284127 19754784 ~ 19755374 (+)
G298477 NA non-coding upstream 402122 19637045 ~ 19637379 (+)
G298427 NA non-coding upstream 508570 19530647 ~ 19530931 (+)
LOC117599707 NA non-coding upstream 615891 19423019 ~ 19423610 (+)
G298511 NA non-coding downstream 142132 20183311 ~ 20190808 (+)
G298576 NA non-coding downstream 195665 20236844 ~ 20237319 (+)
G298586 LOC108258222 non-coding downstream 238315 20279494 ~ 20295153 (+)
G298596 NA non-coding downstream 269473 20310652 ~ 20338599 (+)
G298602 NA non-coding downstream 316881 20358060 ~ 20358322 (+)
G298409 NA other upstream 492767 19401549 ~ 19546734 (+)
G298379 NA other upstream 748962 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 901888 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1511302 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1793444 18186027 ~ 18246057 (+)
LOC117599696 NA other downstream 41327 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 784510 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1292086 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1667179 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1710387 21751566 ~ 21755344 (+)

Expression


Co-expression Network