ino80 (ino80,LOC107668207,LOC107739367,LOC107721325)


Basic Information

Item Value
gene id ino80
gene name ino80,LOC107668207,LOC107739367,LOC107721325
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18186027 ~ 18246057 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352440
ACCGCCTCAGTCTCTCTCCTTGTTCACAAGCGCCATTTTGGAGACAGAGCGGCGCTGTGAGTCGGCAGCAGCGGAGACGGAGCGAAAACAGTGGGGACACGGGGCGACGAGtgAGAGCCCTGCTGGGTCCGGGACCGGTTCTGTCTCCTTATGGCCTCAGAGCAGGATGGCGTTGGAGCCTCTACCTGCCTCAAGTTGGCCAAACCGCTGCACCTGCAGCACCTGGAGCGCTCGCTCCGCCTCGACGCCTTCCTCCGCCACTCCTCCGCCATCTTCAACCGAGACATATCCAGtgatgaCAGCGATGACGGTCTGGGTGAAGGCCCGTCTCTGGCCCCTTCGAACCCTCACGCCCCGGTGCTGGTGGTGAAGGAGGAGGCGTCTGACTCTGAGGAGGGTGTGAGGAGCTCAGGAGgaagagcaggaggaagaggaggagcggAGTGCGGTACTCTGAATGGAGCTCTGCTTCAGGAGCACAAAGCGGACAAGGCCAGTCTGTACAACTTCACCAAGCTGAGGAAGAGCAGGAAATGGCTGAAGGGTGTGTTGCTAAGCGACGACACCACGGATTCAGACACGGATTCGGATGATTCGGATTTTTCGCTGACCCGGGAGGAGCTCCATGACATGCTGAGGCTGCACAAGTTTACCCGCACGCACCAGAGCAAGTTCCGGGCCGACCGCGAGGTG
>XM_034313659.1
CGTGCTCCGTCCTCGCCATGGCGCCGTTGTCCCTGCTCGCTCGGTTACTGAAAGTGGCCGCCTCTCTGCTGCTGCCGAGTCCACCGCCTCAGTCTCTCTCCTTGTTCACAAGCGCCATTTTGGAGACAGAGCGGCGCTGTGAGTCGGCAGCAGCGGAGACGGAGCGAAAACAGTGGGGACACGGGGCGACGAGtgAGAGCCCTGCTGGGTCCGGGACCGGTTCTGTCTCCTTATGGCCTCAGAGCAGGATGGCGTTGGAGCCTCTACCTGCCTCAAGTTGGCCAAACCGCTGCACCTGCAGCACCTGGAGCGCTCGCTCCGCCTCGACGCCTTCCTCCGCCACTCCTCCGCCATCTTCAACCGAGACATATCCAGtgatgaCAGCGATGACGGTCTGGGTGAAGGCCCGTCTCTGGCCCCTTCGAACCCTCACGCCCCGGTGCTGGTGGTGAAGGAGGAGGCGTCTGACTCTGAGGAGGGTGTGAGGAGCTCAGGAGgaagagcaggaggaagaggaggagcggAGTGCGGTACTCTGAATGGAGCTCTGCTTCAGGAGCACAAAGCGGACAAGGCCAGTCTGTACAACTTCACCAAGCTGAGGAAGAGCAGGAAATGGCTGAAGGGTGTGTTGCTAAGCGACGACACCACGGATTCAGACACGGATTCGGATGATTCGGATTTTTCGCTGACCCGGGAGGAGCTCCATGACATGCTGAGGCTGCACAAGTTTACCCGCACGCACCAGAGCAAGTTCCGGGCCGACCGCGAGGTGCACAAACACACCCGTGTCACTACAGCttacatcatttattcatcaacctgtatattatttttactcttCATTTCTTAAGGTTTTGTTAGTTTctattagtttttatttctgtgtcaTTCTAAtatCTGGGGgcccaagaagaagaagattaaagAGGAGAAGAAATTTAAAGCCAAATtaaagaagatgaaaaagaagaagaaacgaGGCGAGGAGTTCTCCAGCGAGGGACGGCCCTACGTCAGCAAAATATTCGCCAAGTTCTCCCATGATGCACCTCTGCCCATGACCAAGAAGAAGCACTTAACCGTCGAGCAGCTAAACGCACGCAGGAGAAAAGTCTGGCTTACTATCGCCAAAAAAGAAAACCCCAAAgcTTTTAAGCAGAAAGCCTCTGCGAAGAACTTCGTGTTAACCAATGCCAAAAAGctgGCCCACCAGTGCATGCGTGAGGTGCGTCGAGCCGCGATCCAGGCGCAGAAGAACTGTAAGGAGACGCTTCCTCGAGCTCGACGCCTCACCAAGGAGATGCTGCTGTACTGGAAGAAGTACGAGAAGGTGGAGAAAGAACATCGCAAGCGCGCTGAGAAAGAGGCTCTAGAGCAGCGCAAACTGGACGAGGAGATGagagagGCTAAGCGGCAGCAGAGGAAGCTGAACTTCCTGATCACGCAGACGGAGCTGTACGCTCACTTCATGGGCGGGAAGCACAAAGGCGCGGGCGGAGACAGCGCTCAGGACGAGATCCTCAGGAAGCTGGACGAGAGCGCCGCCCAGAGGCAGATCAGCATCGGCGGGGGGGTGATGGTCAACATGGGCCACGAGGAGTACGACAGTGAATACTACAAATCTCAGGCCCTGAGGAACGCCAAAGAAGCCTACCAGATCCACCAAGCCAGAACGAGGCAGTTTGACGAGGAATCGAAGGACAGCCGCAGTGCCTCTCTGCACGTGGCGGGTGGGTGTGGCTCCGGGTTCGGGGAGAGCTACAGCCTGTCTAATCCCTCCATCCAGGCTGGAGAAGACATTCCCCAACCCACCATCTTCAACGGCAAGCTCAAAGCCTACCAGCTCAAGGGCATGAACTGGCTCGCTAACCTTTACGAACAGgGCATCAATGGCATCCTGGCAGATGAGATGGGTCTGGGTAAGACGGTCCAGAGCATCGCCCTGCTGGCCCACCTGGCCGAGAGAGACAACATTTGGGGTCCCTTCTTGATCATCTCTCCGGCCTCCACGCTCAACAACTGGCACCAGGAGTTCACCCGTTTCGTGCCCAAATTCAAGGTGTTGCCGTACTGGGGGAACCCTCACGACCGTAAAGTGATCAGGAAGTTCTGGAGCCAGAAAACGCTGTACACGCAGAATGCGCCCTTCCACGTGGTGATCACCAGTTACCAGCTGGTGGTGCAGGACGTGAAGTATTTCCAGCGGGTCAAGTGGCAGTACATGGTTCTGGACGAGGCGCAGGCTCTGAAGAGCAGCACCAGCGTGCGCTGGAAGATCCTGCTTCAGTTCCAGTGCCGAAACCGACTGCTGCTCACAGGAACACCCATCCAGAACACCATGGCCGagTTGTGGGCTCTGCTGCACTTCATCATGCCGACTCTGTTCGACTCCCACGAGGAGTTCAACGAGTGGTTCTCCAAAGACATAGAAAGCCACGCCGAGAACAAATCCGCCATCGACGAGAACCAGCTCTCCAGACTGCACATGATCCTGAAGCCCTTCATGCTGCGCAGGATAAAGAAGGATGTAGAGAACGAGCTCTCGGACAAGATCGAGATCTTGACGTCGTGCCAGCTGACGAGCAGACAGAGGCTCCTGTACCAGGCTCTGAAGAACAAGATCTCCATCGAGGACCTGCTGCAGTCGTCCATGGGCACGGCACAGCAAGCGCACAGCACCACCAGCAGCCTCATGAACCTCGTCATGCAGTTCCGAAAGGTGTGTAATCACCCGGACCTGTTTGAGAGACAGGAGACGCGTTCCCCATTCCACATGTCCCTAAAACCCTTCATCATGTCCAAGTTCCTGTTCCGCCACGGCGTCCTTCATACCTGCACCCCGGGAAGGAGCAAACTGCTGCAGGTTTTATTCTCACCGTTCTCCCCTCACCACATCCACCACTCCTTATTTCACACCACAAGAGATGAAGGCAGCTGCTTCTCGTTTCTGCGCTTCATTGACGTCTCTCCAGCAGAGATGTCCAACGCCATGCTGCAGGGAACTCTGGCCAGATGGCTCGCGCTTTACCTCTCCTTTAAAGCTGCTCACCGGCTCCATCACCGGCGGCTGTGGAGCGcagacgaggaggaggaggatggtgGTGGTGGGAGGAAGGCTGGGAGCAGCACAAGCTCTGGATCATGTTATCTCTCTAACAGAGATCTCATCCTGTGGCCAGACAGAACCACGTCGTTCCCCAACACGCACAACAGCACCGTCCTACAGGATCTGGTTTTCACTTCTCTCCGTCCGtggactttcacacacacagatgtagtGATACACAGCAGACGCTCCAACACCTCCACCCTCAGACGCTGCCAACCCACCCAGCCACCCAAGTTCCTGCTCACTGTTACACCcaggGTGACAGCGGTTCCCGTAGAGCGTTACTGTGCCGACCGCAGCGCCGAGTACGAGTGGCGGCAGGTCCGTGACGGCGGCAGTTTGACCGCCAAGCAGTGCTTCCTGTTCGGCTCACCTGAGCTGGCGCGCACCTGGGCCGCCCGCGCTCACTACTTCCACCCTCAGAGCCCGGGGGGGTTGATGGCCCTGCAGCCCCGACACGGCTGGTCCTTCATCAGGATACCGGACAAGGAGAGCCTGATCACGGACAGTGGGAAGCTCCACACTCTGGACCTGCTGCTGACTCAGCTGAAGTCTCAGGGCCATCGCGTCCTCATTTACTCCCAGATGACCCGCATGATCGACCTGCTGGAGgagTATATGGTGTACcgaaaacacacatacatgcgaCTGGACGGTTCGTCCAAGATCTCGGAGCGTCGTGACATGGTGGCGGACTTCCAGAGCCGGACGGATATATTTGTGTTTCTCCTCAGCACTAGAGCAGGGGGTCTGGGGATAAATCTGACCGCTGCAGACACGGTGATTTTCTACGACAGTGACTGGAACCCCACGGTGGATCAGCAGGCCATGGACCGAGCTCACAGACTGGGCCAGACCAAGCAGGTCACAGTTTACCGCCTCATATGTAAAGGCACGATAGAGGAGCGAATCCTACAGCGGGCCAAGGAGAAGAGCGAGATTCAGAGGATGGTGATTTCAGGAGGGAATTTCAAACCCGACACCCTGAAGCCTAAAGAGGTGGTCAGTCTGCTGCTGGACGACGAGGAGCTGGAGAAAAAACTGCGTTTAAGGCAGGAGGAGAAGAGGCAGCTGGAGGAGAGCAGCAAGGTGAAGGACCgtaagaggaagagagaaaaatacgCCGAGAAGAGGAAAAAGGAGGAGGACGCagagacgaagaagaagaaagaaggcgTGAACTTGGTGATCCCGTACGCCCCCTCGGCGGACAACTCCAACCTGTCGGCGGACGGCGAGGACTCGTTCATCAGCGTGGACATGGAGTCGGCCATGCCCAGCCCCTTCAGCGAGATCTCTCTGAGCAGCGAGCTGCAGCCGGGCTCTCTGCCAGCCGATGAGAGCAGCAGCGACATGCTGGTGATCGTGGATGAACCGCTGCCCACCAACTCGCCCGCCTCAGGCACCGGCTCTGTCTCGGACAACATGAACGGTGTCTCTTCTCTAGACGTGTCGAGTCCAGGCAGAGGCAGAGCCGCTCGGAGCCGAGGGCGACCCAAAGGCTCGGGAACCGGCGGGAAGTGCGCGAGCAGGAAGGGTCGAGGGAGGAAGTCGACGGCCGGCAGTGCAGCAGCGATGGCTGGAGCGATGGCAGGGGCAGCGGCCGCTTCGGCTGCAGCGTACGCGGCGTACGGCTACAGCGTGTCTAAAGGTATTGCTGCTGCCGCTTCTGGCTCCTTGCAGCCGGCGATTGCGCGATCTTCAGCCTCGGCAGCGTTCATCCCCGTGAGCACGACCTCCCCCCAGGCTAAGGGCTCGTCTCTGGGCTCGGGCGCTCAGCTCCTTCCACACGGCAGCTCGCACGTCCTTCACGCTCCCTCCAAGAGAGGCAAAGCTCCAAGCGGCCATGCTGGCGGACGGTAGCAGTAGCACCGTGTGGAGGTTATCGTTCTAGTTCGGCCAGTAATTTTAGTCTTGGGCTGTGAGGTTTTCCATGGTTTATGATGTCTACCTATGcggaaaaaaatcatttcaccAGGCCTGTAGTCACTGTGAAGTAGGATCATTTGGGTTTTTCGGCTAAAATGCAAATCTGATTGTCGATTAATATGAACGAGATACCGATAGCGCGACTGTAATTCCACGCATCGCTCCTAGTTTTGCACTTATCCTTCACCAGTTACTCATTTTTTTTGGGGCCACCAGCATGAAAtatatcctttttttccctgtttgcAAGAACATTTAGCACAAATATACAACACAGGAACAATAAATTAAACCTCAAACATCATCTCTACTCAAACACACCAGATTGTGAAAGATCAACCATTTAAAATGCCAAACTTCTCTTTATACAGCTGTTTGCTTTGAGGAAGAATCCGCTTCAGCTACAGAtacttaatatataaatattccgACCTGTGAGGAGAaaatgagtttttttgtttttttttgaatgaaagtGTAAATGTGATGCTGCTTtcaaaaaatggggaaaaaaagaaaaaaaattcactactCCACTAAATGTGGAATATTTCTGACTTGGAAAATTCTTGGATGGATGTAAAATGTATCATAgcttaagttaaaaaaaaaatgtgttaatttatgAAGATTTGTGCTAACTGTAAATTGTAATggagctgtttatttttaaacgtATTGAAATCGCATCGTTTTTGTGGCACCAGTGTTTTTTTCGGGGGGGGGAGTTTATTTTGTGTCTAAAGCGTGATTATTTGTCCGGTGTTTGTAAATACCACAGCGGATCTCGCTCCTTTCAACGTTCTCCATATTTCCCATGATGCTCGTCTATTTTTATAGGTCACCGTGTACATacgagagaaagaaaagtgttgTTTTACTAACGTGGAGTAAATccgaaataataataataaaaaaa

Function

symbol description
ino80 Predicted to enable ATP hydrolysis activity and histone binding activity. Predicted to be involved in DNA repair; chromatin remodeling; and regulation of transcription from RNA polymerase II promoter in response to stress. Predicted to act upstream of or within cellular response to DNA damage stimulus; chromatin remodeling; and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Orthologous to human INO80 (INO80 complex ATPase subunit).

NR:

description
PREDICTED: DNA helicase INO80

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K11665 INO80, INOC1; chromatin-remodeling ATPase INO80

RNA

RNA id representative length rna type GC content exon number start site end site
TU352440 False 693 TUCP 0.61 5 18186109 18195131
XM_034313659.1 True 5960 mRNA 0.54 36 18186027 18246057

Neighbor

gene id symbol gene type direction distance location
vps18 vps18,LOC107739368,LOC107602125,LOC107668247,LOC107659178 coding upstream 1730 18170603 ~ 18184297 (+)
pigh pigh coding upstream 45876 18130872 ~ 18140151 (+)
wdr21 dcaf4,LOC107602090,LOC107659175,LOC107562700 coding upstream 71091 18106676 ~ 18114936 (+)
rgs6 rgs6,LOC108424512,LOC108257637,LOC107659172,LOC107602058,LOC107721319 coding upstream 118594 17956904 ~ 18067433 (+)
rab15 rab15,LOC107668202,LOC107671782,LOC106571087 coding upstream 343623 17827153 ~ 17842404 (+)
zbtb25 zbtb25 coding downstream 372420 18618477 ~ 18625852 (+)
prph2lb LOC108258119,LOC108424527,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225 coding downstream 599603 18845660 ~ 18849892 (+)
serpina10a LOC108258118 coding downstream 605574 18851631 ~ 18857872 (+)
LOC113547694 LOC108257617 coding downstream 649019 18895076 ~ 18904325 (+)
asb2a.2 NA coding downstream 660495 18906552 ~ 18914664 (+)
G297488 NA non-coding upstream 39524 17708768 ~ 18146503 (+)
G297558 NA non-coding upstream 187796 17910989 ~ 17998231 (+)
G297515 NA non-coding upstream 325338 17802945 ~ 17860689 (+)
G297531 NA non-coding upstream 360631 17824665 ~ 17825396 (+)
G297492 NA non-coding upstream 472929 17712804 ~ 17713098 (+)
G297632 chac1 non-coding downstream 4225 18250282 ~ 18252424 (+)
G297650 NA non-coding downstream 7369 18253426 ~ 18253628 (+)
G297973 NA non-coding downstream 329935 18575992 ~ 18576356 (+)
G298036 NA non-coding downstream 482917 18728974 ~ 18729402 (+)
G298128 NA non-coding downstream 616943 18863000 ~ 18863586 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 243849 17854724 ~ 17942178 (+)
max max,LOC107721316 other upstream 378850 17789100 ~ 17807177 (+)
syne1a LOC108257639 other upstream 706756 17252099 ~ 17479271 (+)
G296863 LOC108257755 other upstream 1373234 16812117 ~ 16812793 (+)
afdna afdn other upstream 1378736 16680096 ~ 16807291 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other downstream 249618 18495675 ~ 18528199 (+)
itpk1a itpk1,LOC108257830 other downstream 849895 19095952 ~ 19137613 (+)
G298379 NA other downstream 1043928 19289985 ~ 19290539 (+)
G298409 NA other downstream 1155492 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 1836449 20082506 ~ 20084497 (+)

Expression


Co-expression Network