G297632 (chac1)


Basic Information

Item Value
gene id G297632
gene name chac1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18250282 ~ 18252424 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352442
agcACCTTTATTTAAGGACATAAGTGAACAATGGACTTCCTTTTATAACAAAGGGTCATTTTCTGGAGTGCAAAGTAAACAGAATGTTTTGAAGTAGATGTGTGCGTCGTACAGCTTCGTACGGGAGTGAGCGATGTGTGGAGCTTAGTGAGAGCAATGCGATATGACGCGAACGTGCTACTTGTAACAGTATAGTAAAATTAACGCACGAGAATGTGAACCGGAACTACAGGAACTGTTTCAGCTTAAAGCAGGTGCGCACTGTTGGGCCGCTAACAGTAAAGGCCTGAAGACAGCGAGGCAGGCCCTCTCGATGGAGAACAGGTGAGGGTCGTCGACCCCGGGGCAGCTCTGCCTCATGAACTCAGCCAGGCGGAGCAGGTACTCGACGTTGTAGCCCGTCTTCCCCTTGCACACCGCGATCTGAGCAGCGATCTCGTCCGTACTCGCAGGACCCAGGTAGGTCGGGTTGTCTTCTGTAGCGATGTAAACCAGAGACTGGACGGAGGGCTGGCTCTCGTCGACGCGGGATGAACTCGACCATGCGGGTGCCGTAGCCTCCTCGTACCGCTTCGCGTATGTTCAGGTAGGCGAGGCATTCCTCGATCTGGGAGCCGGTCACCTCGAAGGCCACGCCCCAGGTGCACGCCTGCGGAGGAGAGAGAAGCGGCGTTAAAATTATGCACTCAATCAGAACAGTtaaagaagctgtgtgtgtgtttacgcaCATGCTATACGGTGTTGCCAGCTTAGCGACTTTAGAGCtagatttggtgactttttaaaactttatatatataaaaaaaaaggccctATAGACAAAActagtgaccaatcactgatccccacGGCTCCCggcgaccaatcactgatcaccactgtttatATTGTTCTCTTTTTGGTGGCTTTTACAGTAACAAAACAAAGTTATTCCATCCTACCCATTTCCCAACTCCTCACTACCACGGCATCATTTTTTCTGCATTCTTCATAGAAATGATACAAGTTTTCTCtctcatataatatatatttaaaaatgatacacTACATATAAATAGTTTGTGCTCGCGCGACCAAAGATGACTTCTTTCTACAAGAGCTacaattttcttttctgataaaaCTTCAGAAAACCTTCGGATATGCAAATGACCGTTACGATTCGAGGAATATGCTAATTGACCCGTGACGTCACGCCCCGCACAGCTGGCAACACGTCACACAGTTTTGCTGTAGGAAGAACCGGAAGTTCCACTTACGTCATCCTCCTCCAGGAGCGTCACGACTCTTCCAGGCTTTCGTCACTTCCGCGGTGGAAGGTGTCTCCGTGCCAGAAGCGCCGCTTGTAGCCGCGGATGAAACCGACGTGGCTGCGCTTGTACTTGAAGTCGGGTTTCCACACCAGGGAACCGTAGCCGAAGATCCACAGGCTGCTCTTACCGGCTATGATGTCTTGAGGCTtcattgttaaaaatgattttaaaaaaaaataagctatGAAACCGTTACAGGAGCGAAACCGGCTAACCCGCTAGCGTTAGCTTCCTCCGGTCCAGGAGCAGAGGTATCGGCTGGCTCACCGCTATACCGCGACCGGTATTGGAGCCCAACTGCTTGGCAGTTGTGAAGATGGAATTGCGCAGATCTGGTTGTTTTGCCTGGTGCATGCCGCCGCATTAGTGTCGCCGCATCATCGCCTTAAAACGCCATGTTAGCCTTTTCGGCTTGGCTCGAgatcaaaaacaaacacttaaaATCCCGCTTAGCGGGTACTCAGCTAGCCTGCTAGCCTTTTCACCCgtcactaaaataaaaaaaaaaataactagaaAGCCAATACTAGCtatctatatttaaaaatatatatttctatactaTTAGCTTCCTAGCTCAACAGCAGCAGCGATGCTCTT

Function

symbol description
chac1 Predicted to enable Notch binding activity and gamma-glutamylcyclotransferase activity. Acts upstream of or within with a positive effect on glutathione catabolic process. Predicted to be located in trans-Golgi network. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; periderm; and solid lens vesicle. Orthologous to human CHAC1 (ChaC glutathione specific gamma-glutamylcyclotransferase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU352442 True 1913 lncRNA 0.48 3 18250282 18252424

Neighbor

gene id symbol gene type direction distance location
vps18 vps18,LOC107739368,LOC107602125,LOC107668247,LOC107659178 coding upstream 65985 18170603 ~ 18184297 (+)
pigh pigh coding upstream 110131 18130872 ~ 18140151 (+)
wdr21 dcaf4,LOC107602090,LOC107659175,LOC107562700 coding upstream 135346 18106676 ~ 18114936 (+)
rgs6 rgs6,LOC108424512,LOC108257637,LOC107659172,LOC107602058,LOC107721319 coding upstream 182849 17956904 ~ 18067433 (+)
rab15 rab15,LOC107668202,LOC107671782,LOC106571087 coding upstream 407878 17827153 ~ 17842404 (+)
zbtb25 zbtb25 coding downstream 366053 18618477 ~ 18625852 (+)
prph2lb LOC108258119,LOC108424527,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225 coding downstream 593236 18845660 ~ 18849892 (+)
serpina10a LOC108258118 coding downstream 599207 18851631 ~ 18857872 (+)
LOC113547694 LOC108257617 coding downstream 642652 18895076 ~ 18904325 (+)
asb2a.2 NA coding downstream 654128 18906552 ~ 18914664 (+)
G297631 NA non-coding upstream 63146 18186304 ~ 18187136 (+)
G297488 NA non-coding upstream 103779 17708768 ~ 18146503 (+)
G297558 NA non-coding upstream 252051 17910989 ~ 17998231 (+)
G297515 NA non-coding upstream 389593 17802945 ~ 17860689 (+)
G297531 NA non-coding upstream 424886 17824665 ~ 17825396 (+)
G297650 NA non-coding downstream 1002 18253426 ~ 18253628 (+)
G297973 NA non-coding downstream 323568 18575992 ~ 18576356 (+)
G298036 NA non-coding downstream 476550 18728974 ~ 18729402 (+)
G298128 NA non-coding downstream 610576 18863000 ~ 18863586 (+)
G298150 NA non-coding downstream 749916 19002340 ~ 19066945 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 4225 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 308104 17854724 ~ 17942178 (+)
max max,LOC107721316 other upstream 443105 17789100 ~ 17807177 (+)
syne1a LOC108257639 other upstream 771011 17252099 ~ 17479271 (+)
G296863 LOC108257755 other upstream 1437489 16812117 ~ 16812793 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other downstream 243251 18495675 ~ 18528199 (+)
itpk1a itpk1,LOC108257830 other downstream 843528 19095952 ~ 19137613 (+)
G298379 NA other downstream 1037561 19289985 ~ 19290539 (+)
G298409 NA other downstream 1149125 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 1830082 20082506 ~ 20084497 (+)

Expression


Co-expression Network