G298150


Basic Information

Item Value
gene id G298150
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19002340 ~ 19066945 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353027
aaaaaaaaaacaaaaactgaataatCTCCTGAATCATGTCTTTACACCTGCATCAGGTGAGTAATGAAAGTTCAGTATTAATCAAAGCGACAACTATGGATCGTCCATTTTCTACGTAGATGCGTAACACGGAGCCGCCATTTCAGAGACAAGacatttgaatgaaatttttctcatttctatgcaaattagcagTGACGCTGTAAAGAAGTGACGAATCCAAACGATTGTCTCGGATGAATCTTCGGACCGAACGTACAGCGCGTGTGGTCCGACGCTTCCTCAGTTCCCTGCTCATAACTTTAGTTCATACCTGTAagacattacgaagaaaaataaagttcgGAAGAAGAGTAGAAGAGATCGATGTTGCCTCTGGTGTAAGTAGctagtagctagctaatgtgagGATCCGAGTACGTAACGTAAATCAAGCATTTTCACATTAATTAGAGTTATTTTACTGGTTAGCTTTAGAAGTGATGTATAGCTACTTatcaggaatttaaaaaataaaaaagttagacaggccacgcccagtAGATTCCGTACACGCCCACAAAAGACAAACTAAACTACGAGTCGAGTCATTAAACTACGAGTCGTCACCTGCTAGTGCGGACAGGTTCAGAGCACGTTCACCTGCTGATACATGATGCATGAAGTCTAATGCTGCGTTCATAAAAACGTTCAACCTTCGAGCAGAAAAAACTCGTAATTCCTACTCAGAAAAAAATTCCGACTTGTTAGAGTCTGAATCCTGAGATCACTCCAACATGGAGGTGCATTTTAAGCCTGTTTCTGTTTGCTTTAACACTCTGAGATCACTAAATATAACAGGATAGTTTGTGCGcttccatgttttgttttgttttcttcagcACTATAATCCattacatgaatgaatgaataaataaataaatggagccCTAACCAGCTTTAACACTCCGGTATTCAGGTCCGGAGCAAAATCGATGCTTTTGGTTGATTTGGCTGTTTAGTAGAGAGATGATACGATATCGCTTTATCTTTACTGATAACGAAACCTGatattgatatttaaaaataaatgaatattgcaCCTTAAAAGAAAAACCTTGAATAGCCAttgaatatgtttttctttaaaggtgcaatagtcgattttttttatttgtattattccttactACTACAAATAACATGGAAGATATGTTGAacacgatttaaaaaaaaacaaacaaacaatggaTTAAGTCATGGCCTTCGCTAAAGTGTATTAATTCGCTGAAAAAACCCGTTTGGGAAACGGACTTCTGGTCCAGAACGCAGCAGGTTTGTGTTTGAAATCATTCatgaaatcatttaaatgtcaaacccacctgactgttagagacctaatcttgagaaaaaaaaaacaaaaaaaataactctTACCTcatgcacctttaaaaacagctaagctttaaactgttttttaactgaagcattaaaaaaaaaatacgttGCTAAAAATATGACttacacattatacactgcaaatataataaatataaacagtcaagtctctttgtaaacatgtaaacatttacatttccagAACAAATCATTTCTAAACTCTGGGTATCAGATCCATCAGTTTCACCCTGAATGTAATTTAACAAACCTGAAAGCAGAAAAACATTGTCCGAGGAGTGTGTGGAGCTGAGAACGACGTCCTAAAAACCTCTTTTATTCGTCACTCGGAAACACAGAGACggaaaaacataaacatttagaacattttgtgtagaaattataaaaataacgCAGAACACGGAGTcgatttattataaatttatattgtgTTGGTCCAGAACACACGGGATTCCTGCAGCGCTACGGCTCTGTGCTTTatctcaaacaaacaaacaaacaaaaaaaaacactacaactGAAAATTGACTCACTTCCTgcaggtgagtcgattcagagtcgattcagagtcgattcatGAACGCAGCACAGACGCTGAGATTTATCGCTCGTCCgtttattttagcatttcacAATCACGCGTCCACCCCAGCTCGCTTTCTTTACAGTGCATGGATTTACACGCAGCCATAACGAGTACAGAacttatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagggctGTTGCTTGATTCACGCTCGTGTGGCAAAACCTGCTGCTATGAACTCTTAAGGGCTTGTCTTAGCAAAAATATAAGAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353027 True 2237 lncRNA 0.37 4 19002340 19066945

Neighbor

gene id symbol gene type direction distance location
prima1 LOC108257636 coding upstream 13684 18953582 ~ 18988656 (+)
asb2a.1 asb2 coding upstream 65054 18917462 ~ 18937286 (+)
asb2a.2 NA coding upstream 87676 18906552 ~ 18914664 (+)
LOC113547694 LOC108257617 coding upstream 98015 18895076 ~ 18904325 (+)
serpina10a LOC108258118 coding upstream 144468 18851631 ~ 18857872 (+)
si:dkeyp-55f12.3 NA coding downstream 18763 19085708 ~ 19087204 (+)
LOC113547660 NA coding downstream 174602 19241547 ~ 19249331 (+)
LOC113547657 LOC108257673 coding downstream 187091 19254036 ~ 19264088 (+)
LOC117599671 NA coding downstream 262280 19329225 ~ 19329925 (+)
LOC113524710 NA coding downstream 299061 19366006 ~ 19366943 (+)
G298128 NA non-coding upstream 138754 18863000 ~ 18863586 (+)
G298036 NA non-coding upstream 272938 18728974 ~ 18729402 (+)
G297973 NA non-coding upstream 425984 18575992 ~ 18576356 (+)
G297650 NA non-coding upstream 748712 18253426 ~ 18253628 (+)
G297632 chac1 non-coding upstream 749916 18250282 ~ 18252424 (+)
G298174 NA non-coding downstream 20313 19087258 ~ 19088413 (+)
G298187 NA non-coding downstream 43642 19110587 ~ 19110814 (+)
G298195 NA non-coding downstream 73794 19140739 ~ 19142981 (+)
G298215 NA non-coding downstream 121956 19188901 ~ 19191553 (+)
G298230 NA non-coding downstream 149614 19216559 ~ 19217201 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 474141 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 756283 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 1060162 17854724 ~ 17942178 (+)
max max,LOC107721316 other upstream 1195163 17789100 ~ 17807177 (+)
syne1a LOC108257639 other upstream 1523069 17252099 ~ 17479271 (+)
itpk1a itpk1,LOC108257830 other downstream 29007 19095952 ~ 19137613 (+)
G298379 NA other downstream 223040 19289985 ~ 19290539 (+)
G298409 NA other downstream 334604 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 1015561 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1758744 20825689 ~ 20838690 (+)

Expression


Co-expression Network