LOC113524710


Basic Information

Item Value
gene id LOC113524710
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19366006 ~ 19366943 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313601.1
CCAGTGGCCCGAGAGGTCATGTGGCAGGTGGTTCAGGCTGCTCATCACTGCTGTAAACATGAAGTTCTTCACCATGACATCAAGCCTGAGAATATTCTGATCAATCTGGACATGCTGGAGTTGATCGACTTTGGCTGTGGTGATTTGTTGACGGATGAGCTCTACAATGACTATACAGGCACTCTGGCTTACTGGCCTCCTGCGTGGGTTCTCTACAGAGAGTATTTTGACATTCCTGCTACTTCCTGGAGTCTGGGTGTAGTTCTGTTTGATTTGATCTGCGGACAGTTGGCCTTTTTCAGCAATAATGAGATTGTTGAGGGGCATCTGTGTCTCGATCCTGATTTGTCCGAGGGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313601.1 True 360 mRNA 0.48 3 19366006 19366943

Neighbor

gene id symbol gene type direction distance location
LOC117599671 NA coding upstream 36081 19329225 ~ 19329925 (+)
LOC113547657 LOC108257673 coding upstream 101918 19254036 ~ 19264088 (+)
LOC113547660 NA coding upstream 116675 19241547 ~ 19249331 (+)
si:dkeyp-55f12.3 NA coding upstream 278802 19085708 ~ 19087204 (+)
btbd7 LOC108257833 coding upstream 301563 19038213 ~ 19064443 (+)
LOC117599700 NA coding downstream 1389 19368332 ~ 19466148 (+)
LOC117599704 NA coding downstream 14382 19381325 ~ 19402770 (+)
LOC117599701 NA coding downstream 112211 19479154 ~ 19480718 (+)
LOC113523955 NA coding downstream 123995 19490938 ~ 19492516 (+)
LOC113525605 NA coding downstream 157710 19524653 ~ 19588569 (+)
G298398 NA non-coding upstream 39197 19326402 ~ 19326809 (+)
G298397 NA non-coding upstream 40572 19325184 ~ 19325434 (+)
G298381 NA non-coding upstream 70398 19295363 ~ 19295608 (+)
G298378 NA non-coding upstream 76268 19289466 ~ 19289738 (+)
G298377 NA non-coding upstream 78110 19287658 ~ 19287896 (+)
LOC117599707 NA non-coding downstream 56076 19423019 ~ 19423610 (+)
G298427 NA non-coding downstream 163704 19530647 ~ 19530931 (+)
G298477 NA non-coding downstream 270102 19637045 ~ 19637379 (+)
G298476 nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223 non-coding downstream 271144 19638087 ~ 20069565 (+)
LOC117599710 NA non-coding downstream 387841 19754784 ~ 19755374 (+)
G298379 NA other upstream 75467 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 228393 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 837807 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1119949 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 1423828 17854724 ~ 17942178 (+)
G298409 NA other downstream 34606 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 715563 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1458746 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1966322 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 2341415 21708358 ~ 21719463 (+)

Expression


Co-expression Network