G298476 (nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223)


Basic Information

Item Value
gene id G298476
gene name nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19638087 ~ 20069565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353470
agaaaataacCATTGGATTGTTGTTTTAACAACCTCCAATATAATATCTACTATTGTAATCATGGTTCTGGTTGGAGTTTTacttaaacaaagaaaaggGGCTTCCAACGACCATCCAAATAACACAAATCAGGCTGATGATGAAGATGTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAGCCATGAAGATGTTTATGcacaagttaaaataaaataaagaaaaatgaatgaattcagaTTTAAAAGCAC
>TU353490
GAGGAAGCTCACAACCTCTGATAATGGAACGATCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTACTAATGGAACTGAAGTTAAAGTAATTCAAGTAAAAGAAAATAACCATTGGATTGTTGTTTTAACAACCTCCAATATAATATCTATTATTGTAATCATGGTTCTGGTTGGAGTTTtacttaaagaaagaaaagGGGCTTCCAACGACCATCCAAATAACACAAATCAGGCTGATGATGAAGATGTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAACCATGAAGATGTTTATGcacaagttaaaataaaataaagggaaatgaatgaatttagatTTAAAAGCACCAGATGCTAAATATTTATTGCTGCAAGTCAAACATTATTTGATCATGCATGGTGCATTTAAtcaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353470 False 285 lncRNA 0.34 3 19638087 19676201
TU353490 True 458 lncRNA 0.35 5 19754595 20069565

Neighbor

gene id symbol gene type direction distance location
LOC113523907 LOC108261534 coding upstream 35697 19600748 ~ 19602390 (+)
LOC113525605 NA coding upstream 49518 19524653 ~ 19588569 (+)
LOC113523952 NA coding upstream 90950 19546072 ~ 19547137 (+)
LOC113523955 NA coding upstream 145571 19490938 ~ 19492516 (+)
LOC117599701 NA coding upstream 157369 19479154 ~ 19480718 (+)
LOC113524757 LOC108258230 coding downstream 168754 20238319 ~ 20247950 (+)
LOC113524740 psma6,LOC108258228,LOC108443807,LOC106935624,LOC103149670,LOC103457804,LOC108231735,LOC102217550,LOC103039316 coding downstream 195540 20265105 ~ 20272249 (+)
trnar-acg_10 NA coding downstream 219888 20289453 ~ 20289525 (+)
trnar-acg_11 NA coding downstream 220472 20290037 ~ 20290109 (+)
trnae-uuc_6 NA coding downstream 246780 20316345 ~ 20316416 (+)
G298477 NA non-coding upstream 708 19637045 ~ 19637379 (+)
G298427 NA non-coding upstream 107156 19530647 ~ 19530931 (+)
LOC117599707 NA non-coding upstream 214477 19423019 ~ 19423610 (+)
G298398 NA non-coding upstream 311278 19326402 ~ 19326809 (+)
G298397 NA non-coding upstream 312653 19325184 ~ 19325434 (+)
G298511 NA non-coding downstream 113746 20183311 ~ 20190808 (+)
G298576 NA non-coding downstream 167279 20236844 ~ 20237319 (+)
G298586 LOC108258222 non-coding downstream 209929 20279494 ~ 20295153 (+)
G298596 NA non-coding downstream 241087 20310652 ~ 20338599 (+)
G298602 NA non-coding downstream 288495 20358060 ~ 20358322 (+)
G298409 NA other upstream 91353 19401549 ~ 19546734 (+)
G298379 NA other upstream 347548 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 500474 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1109888 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1392030 18186027 ~ 18246057 (+)
LOC117599696 NA other downstream 12941 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 756124 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1263700 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1638793 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1682001 21751566 ~ 21755344 (+)

Expression


Co-expression Network