trnae-uuc_6


Basic Information

Item Value
gene id trnae-uuc_6
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20316345 ~ 20316416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnae-uuc_6
TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCAGGTGGCCCGGGTTCGACTCCCGGTATAGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-uuc_6 True 72 tRNA 0.56 1 20316345 20316416

Neighbor

gene id symbol gene type direction distance location
trnar-acg_11 NA coding upstream 26236 20290037 ~ 20290109 (+)
trnar-acg_10 NA coding upstream 26820 20289453 ~ 20289525 (+)
LOC113524740 psma6,LOC108258228,LOC108443807,LOC106935624,LOC103149670,LOC103457804,LOC108231735,LOC102217550,LOC103039316 coding upstream 44096 20265105 ~ 20272249 (+)
LOC113524757 LOC108258230 coding upstream 68395 20238319 ~ 20247950 (+)
LOC117599693 NA coding upstream 275166 20039501 ~ 20041179 (+)
trnah-gug_16 NA coding downstream 5117 20321533 ~ 20321604 (+)
trnar-acg_13 NA coding downstream 5674 20322090 ~ 20322162 (+)
trnae-uuc_7 NA coding downstream 5904 20322320 ~ 20322391 (+)
trnah-gug_17 NA coding downstream 6573 20322989 ~ 20323060 (+)
trnah-gug_18 NA coding downstream 10484 20326900 ~ 20326971 (+)
G298586 LOC108258222 non-coding upstream 21192 20279494 ~ 20295153 (+)
G298576 NA non-coding upstream 79026 20236844 ~ 20237319 (+)
G298511 NA non-coding upstream 125537 20183311 ~ 20190808 (+)
G298476 nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223 non-coding upstream 246780 19638087 ~ 20069565 (+)
G298602 NA non-coding downstream 41644 20358060 ~ 20358322 (+)
G298603 NA non-coding downstream 42490 20358906 ~ 20359754 (+)
G298608 NA non-coding downstream 50718 20367134 ~ 20367364 (+)
LOC113524748 LOC108273219,LOC108270753,LOC108261257,LOC108261282,LOC108273546,LOC108273545,LOC108274210 non-coding downstream 195071 20511487 ~ 20512904 (+)
G298645 NA non-coding downstream 196515 20512931 ~ 20551519 (+)
LOC117599696 NA other upstream 231848 20082506 ~ 20084497 (+)
G298409 NA other upstream 769611 19401549 ~ 19546734 (+)
G298379 NA other upstream 1025806 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 1178732 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1788146 18495675 ~ 18528199 (+)
flrt2 flrt2,LOC108258011 other downstream 509273 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1016849 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1391942 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1435150 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 1649909 21966325 ~ 21972928 (+)

Expression


Co-expression Network