LOC113523907 (LOC108261534)


Basic Information

Item Value
gene id LOC113523907
gene name LOC108261534
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19600748 ~ 19602390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313547.1
AGAAACAATGATTACATTCTTTGTCACTCTTTGTCTTTTCACATCAGTGAAAACGTATATGAAGGAGCCTCAAGTTCAAAATGTAAAGTGTGGTGAAACTGTATCTATAAAATGTGACAAGTTGTCCAGtgacaaaaatgatttaatttggttcaaacagagttttggaaaaGTTCCTCAGTGGGTAGTGAGACAAGACACGAACTCAGTCAGAACTGGTGTAAGCTTTTCTGATAAACGCTTCAGTGTAGATAAACTGCTTAATCTCaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCAGAAGTGCTGGGATCTTCACTACACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACGGCATCCTCCGACTGTAACAGTAATGGAGAACGGAGAGTCGCTCACACTCCAGTGTTCAGTACAAGCCTTCACTTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACAGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGACGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGTTCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTAGTAATGGAACTGAAGTTAAAGTAATTCAAGTAAAAGAAAATAACCAttggattgtttttgttttaacaacCTCCAATATAATATCTATTATTGTAATCATGGTTCTGGTTGGAGTTTTacttaaacaaagaaaaggGGCTTCCAACGACCATCCAAATAACACAAATCAGGCTGATGATGATGTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGGCAAGAGCCATGAAGATGTTTATGCACaagttaaagtaaaataaagagaaatgaattCAGATTTAAAGCAACAGATGCTAGAGATTTATTGCTGTAAGTCAATTATTTGGTCATGCGTggcacatttaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313547.1 True 1060 mRNA 0.39 6 19600748 19602390

Neighbor

gene id symbol gene type direction distance location
LOC113525605 NA coding upstream 12179 19524653 ~ 19588569 (+)
LOC113523952 NA coding upstream 53611 19546072 ~ 19547137 (+)
LOC113523955 NA coding upstream 108232 19490938 ~ 19492516 (+)
LOC117599701 NA coding upstream 120030 19479154 ~ 19480718 (+)
LOC117599700 NA coding upstream 134600 19368332 ~ 19466148 (+)
LOC117599695 LOC108261534 coding downstream 55141 19657531 ~ 19662450 (+)
LOC117599691 NA coding downstream 72117 19674507 ~ 19676214 (+)
LOC117599681 LOC108261534 coding downstream 127225 19729615 ~ 19731274 (+)
LOC117599690 NA coding downstream 161660 19764050 ~ 19782996 (+)
LOC113524723 LOC108261534 coding downstream 178771 19781161 ~ 19816065 (+)
G298427 NA non-coding upstream 69817 19530647 ~ 19530931 (+)
LOC117599707 NA non-coding upstream 177138 19423019 ~ 19423610 (+)
G298398 NA non-coding upstream 273939 19326402 ~ 19326809 (+)
G298397 NA non-coding upstream 275314 19325184 ~ 19325434 (+)
G298381 NA non-coding upstream 305140 19295363 ~ 19295608 (+)
G298477 NA non-coding downstream 34655 19637045 ~ 19637379 (+)
G298476 nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223 non-coding downstream 35697 19638087 ~ 20069565 (+)
LOC117599710 NA non-coding downstream 152394 19754784 ~ 19755374 (+)
G298494 NA non-coding downstream 298578 19900968 ~ 19954153 (+)
G298511 NA non-coding downstream 580921 20183311 ~ 20190808 (+)
G298409 NA other upstream 54014 19401549 ~ 19546734 (+)
G298379 NA other upstream 310209 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 463135 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1072549 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1354691 18186027 ~ 18246057 (+)
LOC117599696 NA other downstream 480116 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1223299 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1730875 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 2105968 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 2149176 21751566 ~ 21755344 (+)

Expression


Co-expression Network