LOC117599681 (LOC108261534)


Basic Information

Item Value
gene id LOC117599681
gene name LOC108261534
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19729615 ~ 19731274 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313545.1
GAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaCCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGAGTggagaaaatgtttctgtaaaatgtgATGACTTGTTCACTTACgcatatgatttattttggtacaAACAGAGTTTTGGAAAGGCTCCTCAGTCGGTAGGGAGAGGAGGGAAGAGCTTTTTCACACCCGGTGCAGGATTTAATGATGGACGCTTCAGTATTAGTGTAAATAAAACTCTGCTTAATCTCaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCAGAATGGCTGGTATCTTCACTACACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACAGCATCCTCTGACTGTAACGGTGATGGAGAACGGAGAGTCGCTCACACTCCAGTGTTCAGTACAAGCGTTTACTTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACGGCACAGGAGAATCTCATCCAggaatcatttacactcatggaGATGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGTTCTACTGTGCTGTGGCTGCATGTGGACAAATTCTCTTTACTAATGGAACTGAAGTTAAAGTAATTCAAGTAAAAGAAAATAACCAttggattgtttttgttttgacaacCTCCAATATAATATCTATTATTGTAATCATGGTTCTGATTGGAGTTTTACTTAAAGGAAGAAaaggGGCTTCCAACGACTATCCAAATAACACAAATCAGGCTGATGATGATGTCTTGAACTATGCAGCTGTGAGTTTTGTTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAACCATGAAGATGTTTATGcacaagttaaaataaaataaagagaaattaatTCAGATTTAAAGCACCAGACACTAGAGATTTATTGCTGTAAGTCAAACATTATTTGATCATGCATG
>XM_034313546.1
GAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaCCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGAGTggagaaaatgtttctgtaaaatgtgATGACTTGTTCACTTACgcatatgatttattttggtacaAACAGAGTTTTGGAAAGGCTCCTCAGTCGGTAGGGAGAGGAGGGAAGAGCTTTTTCACACCCGGTGCAGGATTTAATGATGGACGCTTCAGTATTAGTGTAAATAAAACTCTGCTTAATCTCaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCAGAATGGCTGGTATCTTCACTACACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGttttatttttactaattgaTGTTAAAGCTGAGGAGATGAAACAGCATCCTCTGACTGTAACGGTGATGGAGAACGGAGAGTCGCTCACACTCCAGTGTTCAGTACAAGCGTTTACTTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACGGCACAGGAGAATCTCATCCAggaatcatttacactcatggaGATGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGTTCTACTGTGCTGTGGCTGCATGTGGACAAATTCTCTTTACTAATGGAACTGAAGTTAAAGTAATTCAAGTAAAAGGTAAGACATTTGATAAATATTCCTGTTGAAAACTCAGAGACAGTTATAGTGATACTGATCCAAATGATGCTTTATCTTTTCAGAAAATAACCAttggattgtttttgttttgacaacCTCCAATATAATATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313545.1 True 1061 mRNA 0.39 6 19729615 19731274
XM_034313546.1 False 891 mRNA 0.40 3 19729615 19730714

Neighbor

gene id symbol gene type direction distance location
LOC117599691 NA coding upstream 53401 19674507 ~ 19676214 (+)
LOC117599695 LOC108261534 coding upstream 67165 19657531 ~ 19662450 (+)
LOC113523907 LOC108261534 coding upstream 127225 19600748 ~ 19602390 (+)
LOC113525605 NA coding upstream 141046 19524653 ~ 19588569 (+)
LOC113523952 NA coding upstream 182478 19546072 ~ 19547137 (+)
LOC117599690 NA coding downstream 32776 19764050 ~ 19782996 (+)
LOC113524723 LOC108261534 coding downstream 49887 19781161 ~ 19816065 (+)
LOC117599703 LOC108261534 coding downstream 59339 19790613 ~ 19792241 (+)
LOC117599720 LOC108261534 coding downstream 267658 19998932 ~ 20000211 (+)
LOC117599693 NA coding downstream 308227 20039501 ~ 20041179 (+)
G298477 NA non-coding upstream 92236 19637045 ~ 19637379 (+)
G298427 NA non-coding upstream 198684 19530647 ~ 19530931 (+)
LOC117599707 NA non-coding upstream 306005 19423019 ~ 19423610 (+)
G298398 NA non-coding upstream 402806 19326402 ~ 19326809 (+)
G298397 NA non-coding upstream 404181 19325184 ~ 19325434 (+)
LOC117599710 NA non-coding downstream 23510 19754784 ~ 19755374 (+)
G298494 NA non-coding downstream 169694 19900968 ~ 19954153 (+)
G298511 NA non-coding downstream 452037 20183311 ~ 20190808 (+)
G298576 NA non-coding downstream 505570 20236844 ~ 20237319 (+)
G298586 LOC108258222 non-coding downstream 548220 20279494 ~ 20295153 (+)
G298409 NA other upstream 182881 19401549 ~ 19546734 (+)
G298379 NA other upstream 439076 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 592002 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1201416 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1483558 18186027 ~ 18246057 (+)
LOC117599696 NA other downstream 351232 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1094415 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1601991 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1977084 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 2020292 21751566 ~ 21755344 (+)

Expression


Co-expression Network