LOC117599703 (LOC108261534)


Basic Information

Item Value
gene id LOC117599703
gene name LOC108261534
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19790613 ~ 19792241 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313581.1
ATGATCACAGTCCTTGTCGCCTTTTGTCTCTTAACATCAGtgaaaCCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGAGTggagaaaatgtttctgtaaaatgtgACGACTTGTTCACTTACgcatatgatttattttggttcaAACAGAGTTTTGGAAAGGTTCCACAGTTCGTagggagaggaggggagagcTGGTTCACACCTGGTGCAGGATTTAATGATGAACGTTTCAGTgttagtgtaaataaaaatctgcttaatctcaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCAGAATGGCTGGTATCTTCACTACACTTTAGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACAGCATCCTCCGACTGTAACGGTGATGGAGAACAGAGAGTCACTCACACTCCAGTGTTCAGTACAAGCATTTAATTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACGGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGACGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGATCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTACTAATCGAACTGAAATTAAAGTAATTCAAGAAAAAGAAAATAACCATTGGATTGTTGTTTTAACAACCTCCAATATAATATCTATTATTGTAATCATGGTTCTGGTTGGAGTTTtcttaaacaaagaaaagaaaggGGCTTCCAACGACTATCCAAATAACACAAATCAGGCTGATGATGAAGATGTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAACCATGAAGATGTTTATGcacaagttaaaataaaataaagagaaattaatTCAGATTTAAAGCACCAGACGCTAGAGATTTATTGCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313581.1 True 1032 mRNA 0.39 6 19790613 19792241

Neighbor

gene id symbol gene type direction distance location
LOC117599690 NA coding upstream 7617 19764050 ~ 19782996 (+)
LOC117599681 LOC108261534 coding upstream 59339 19729615 ~ 19731274 (+)
LOC117599691 NA coding upstream 114399 19674507 ~ 19676214 (+)
LOC117599695 LOC108261534 coding upstream 128163 19657531 ~ 19662450 (+)
LOC113523907 LOC108261534 coding upstream 188223 19600748 ~ 19602390 (+)
LOC117599720 LOC108261534 coding downstream 206691 19998932 ~ 20000211 (+)
LOC117599693 NA coding downstream 247260 20039501 ~ 20041179 (+)
LOC113524757 LOC108258230 coding downstream 446078 20238319 ~ 20247950 (+)
LOC113524740 psma6,LOC108258228,LOC108443807,LOC106935624,LOC103149670,LOC103457804,LOC108231735,LOC102217550,LOC103039316 coding downstream 472864 20265105 ~ 20272249 (+)
trnar-acg_10 NA coding downstream 497212 20289453 ~ 20289525 (+)
LOC117599710 NA non-coding upstream 35239 19754784 ~ 19755374 (+)
G298477 NA non-coding upstream 153234 19637045 ~ 19637379 (+)
G298427 NA non-coding upstream 259682 19530647 ~ 19530931 (+)
LOC117599707 NA non-coding upstream 367003 19423019 ~ 19423610 (+)
G298398 NA non-coding upstream 463804 19326402 ~ 19326809 (+)
G298494 NA non-coding downstream 108727 19900968 ~ 19954153 (+)
G298511 NA non-coding downstream 391070 20183311 ~ 20190808 (+)
G298576 NA non-coding downstream 444603 20236844 ~ 20237319 (+)
G298586 LOC108258222 non-coding downstream 487253 20279494 ~ 20295153 (+)
G298596 NA non-coding downstream 518411 20310652 ~ 20338599 (+)
G298409 NA other upstream 243879 19401549 ~ 19546734 (+)
G298379 NA other upstream 500074 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 653000 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1262414 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1544556 18186027 ~ 18246057 (+)
LOC117599696 NA other downstream 290265 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1033448 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1541024 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1916117 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1959325 21751566 ~ 21755344 (+)

Expression


Co-expression Network