LOC117599720 (LOC108261534)


Basic Information

Item Value
gene id LOC117599720
gene name LOC108261534
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19998932 ~ 20000211 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313603.1
TGACCACACAAGTTCATTACCTCACTATCACTTTGTCTGAGCAGGAACGATGATCATactctttttcactctttctttcttaacatCAGtgaaACCTTCTGATGTCAAGGAGCTTCAAGTTCAAAAAGTAAAGCGTGgagaaaatgtaactataaaatgtGATGACTTGTCCGGTAACAAAACTAATTTAGTTTGGTTCAAACAGAATTTTGGAAAATTGCCTCGGTTCGTGGTGCGACAGGTGGAGAAGACAATAAGACCCGGTGCAAGATTTGGTGAAGGACGTTTCAGGATTAGTGATGAAAAATTGTTTAATCTTaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCAGAATTGCTGGGATATTCACTACACTTTCGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACAGCATCCTCCGACTGTAACGGTGATGGAGAACGGAGAGTCGCTCACACTCCAGTGTTCAGTACAAGCATTTAATTCAAGCTGTGAAGAACAGAGTGTGTACTGGTTCAGACACGGCTCAGGAGAATCTCATCCAggaatcatttacactcatggaGACGGCAGTGAAGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCAGATAATGGAACGTTCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTACTAATGGAACTGAAGTTAAAGTAGAAGGTTACAGTTGTACTGATCAGACACGTGTGCTGCTCTTGCTCTCAGTTTTTAGAGTTGGAGTTCTTGCCATCATGCTCATTATCTTTACAATAGTcctcatcattttaaaattaagatcaaattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313603.1 True 889 mRNA 0.41 4 19998932 20000211

Neighbor

gene id symbol gene type direction distance location
LOC113524723 LOC108261534 coding upstream 182867 19781161 ~ 19816065 (+)
LOC117599703 LOC108261534 coding upstream 206691 19790613 ~ 19792241 (+)
LOC117599690 NA coding upstream 215936 19764050 ~ 19782996 (+)
LOC117599681 LOC108261534 coding upstream 267658 19729615 ~ 19731274 (+)
LOC117599691 NA coding upstream 322718 19674507 ~ 19676214 (+)
LOC117599693 NA coding downstream 39290 20039501 ~ 20041179 (+)
LOC113524757 LOC108258230 coding downstream 238108 20238319 ~ 20247950 (+)
LOC113524740 psma6,LOC108258228,LOC108443807,LOC106935624,LOC103149670,LOC103457804,LOC108231735,LOC102217550,LOC103039316 coding downstream 264894 20265105 ~ 20272249 (+)
trnar-acg_10 NA coding downstream 289242 20289453 ~ 20289525 (+)
trnar-acg_11 NA coding downstream 289826 20290037 ~ 20290109 (+)
G298494 NA non-coding upstream 44779 19900968 ~ 19954153 (+)
LOC117599710 NA non-coding upstream 243558 19754784 ~ 19755374 (+)
G298477 NA non-coding upstream 361553 19637045 ~ 19637379 (+)
G298427 NA non-coding upstream 468001 19530647 ~ 19530931 (+)
LOC117599707 NA non-coding upstream 575322 19423019 ~ 19423610 (+)
G298511 NA non-coding downstream 183100 20183311 ~ 20190808 (+)
G298576 NA non-coding downstream 236633 20236844 ~ 20237319 (+)
G298586 LOC108258222 non-coding downstream 279283 20279494 ~ 20295153 (+)
G298596 NA non-coding downstream 310441 20310652 ~ 20338599 (+)
G298602 NA non-coding downstream 357849 20358060 ~ 20358322 (+)
G298409 NA other upstream 452198 19401549 ~ 19546734 (+)
G298379 NA other upstream 708393 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 861319 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1470733 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1752875 18186027 ~ 18246057 (+)
LOC117599696 NA other downstream 82295 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 825478 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1333054 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1708147 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1751355 21751566 ~ 21755344 (+)

Expression


Co-expression Network