G298427


Basic Information

Item Value
gene id G298427
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19530647 ~ 19530931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353380
caagcacctgtgtggcctgtgaggaaagaaatggacgaattcttctgatgttataaaggagaaatcgacatgagcgtgtcagattagcaatgtgagaggagaaggacagttgattgtccatggttaccccaagatcctgagatggggatgaatcacctgggatgaacagcagttcagttttggtgggattaagtttcagctgatgagctgtcatccatgatgagatgtctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353380 True 231 lncRNA 0.45 2 19530647 19530931

Neighbor

gene id symbol gene type direction distance location
LOC113523955 NA coding upstream 38131 19490938 ~ 19492516 (+)
LOC117599701 NA coding upstream 49929 19479154 ~ 19480718 (+)
LOC117599700 NA coding upstream 64499 19368332 ~ 19466148 (+)
LOC117599704 NA coding upstream 127877 19381325 ~ 19402770 (+)
LOC113524710 NA coding upstream 163704 19366006 ~ 19366943 (+)
LOC113523952 NA coding downstream 15141 19546072 ~ 19547137 (+)
LOC113523907 LOC108261534 coding downstream 69817 19600748 ~ 19602390 (+)
LOC117599695 LOC108261534 coding downstream 126600 19657531 ~ 19662450 (+)
LOC117599691 NA coding downstream 143576 19674507 ~ 19676214 (+)
LOC117599681 LOC108261534 coding downstream 198684 19729615 ~ 19731274 (+)
LOC117599707 NA non-coding upstream 107037 19423019 ~ 19423610 (+)
G298398 NA non-coding upstream 203838 19326402 ~ 19326809 (+)
G298397 NA non-coding upstream 205213 19325184 ~ 19325434 (+)
G298381 NA non-coding upstream 235039 19295363 ~ 19295608 (+)
G298378 NA non-coding upstream 240909 19289466 ~ 19289738 (+)
G298477 NA non-coding downstream 106114 19637045 ~ 19637379 (+)
G298476 nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223 non-coding downstream 107156 19638087 ~ 20069565 (+)
LOC117599710 NA non-coding downstream 223853 19754784 ~ 19755374 (+)
G298494 NA non-coding downstream 370037 19900968 ~ 19954153 (+)
G298511 NA non-coding downstream 652380 20183311 ~ 20190808 (+)
G298379 NA other upstream 240108 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 393034 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 1002448 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1284590 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 1588469 17854724 ~ 17942178 (+)
LOC117599696 NA other downstream 551575 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1294758 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1802334 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 2177427 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 2220635 21751566 ~ 21755344 (+)

Expression


Co-expression Network