G298398


Basic Information

Item Value
gene id G298398
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19326402 ~ 19326809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353333
cccatatggacggcctgaagaactgtttggattgctggggatggtgccacctgggggctgtggagatggcttggggatcacatatggggagctgtactgtaatggcttgggactgcgattgctgtagtggctttggggctgcagttgccatgagcagcttcgtactcaggactccatcagtggacagtggatagattttaaccagctggacttcttgcaaaaactgtgatgaatttattggttgcacaattgcactatttgtccatatagtacacaacagaagggatttatttataatcgcactatccgttgcacccagatgaggatggattcccttttgagcctggttcctctcaaggtttcttcctcatatcatctcggggagtttttccttgccaccgtcgccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353333 True 408 lncRNA 0.49 1 19326402 19326809

Neighbor

gene id symbol gene type direction distance location
LOC113547657 LOC108257673 coding upstream 62314 19254036 ~ 19264088 (+)
LOC113547660 NA coding upstream 77071 19241547 ~ 19249331 (+)
si:dkeyp-55f12.3 NA coding upstream 239198 19085708 ~ 19087204 (+)
btbd7 LOC108257833 coding upstream 261959 19038213 ~ 19064443 (+)
prima1 LOC108257636 coding upstream 337746 18953582 ~ 18988656 (+)
LOC117599671 NA coding downstream 2416 19329225 ~ 19329925 (+)
LOC113524710 NA coding downstream 39197 19366006 ~ 19366943 (+)
LOC117599700 NA coding downstream 41523 19368332 ~ 19466148 (+)
LOC117599704 NA coding downstream 54516 19381325 ~ 19402770 (+)
LOC117599701 NA coding downstream 152345 19479154 ~ 19480718 (+)
G298397 NA non-coding upstream 968 19325184 ~ 19325434 (+)
G298381 NA non-coding upstream 30794 19295363 ~ 19295608 (+)
G298378 NA non-coding upstream 36664 19289466 ~ 19289738 (+)
G298377 NA non-coding upstream 38506 19287658 ~ 19287896 (+)
G298374 NA non-coding upstream 42923 19277871 ~ 19283479 (+)
LOC117599707 NA non-coding downstream 96210 19423019 ~ 19423610 (+)
G298427 NA non-coding downstream 203838 19530647 ~ 19530931 (+)
G298477 NA non-coding downstream 310236 19637045 ~ 19637379 (+)
G298476 nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223 non-coding downstream 311278 19638087 ~ 20069565 (+)
LOC117599710 NA non-coding downstream 427975 19754784 ~ 19755374 (+)
G298379 NA other upstream 35863 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 188789 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 798203 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1080345 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 1384224 17854724 ~ 17942178 (+)
G298409 NA other downstream 74740 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 755697 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1498880 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 2006456 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 2381549 21708358 ~ 21719463 (+)

Expression


Co-expression Network