G298374


Basic Information

Item Value
gene id G298374
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19277871 ~ 19283479 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353304
GTTTATTTGAAAGCTACTGCATGcaataacaaaaatgataaGTAAAATTGTATTAATACAGTAccttacttttatttatacaatacagcagggtccataagtatttagacagtgacagagttttcataatccacaatggatttgaaatgaagcaatcaagatgtgattgaagtggagactttcagctttaattcgaGGGGTTTAaccaaaatattgcattaactgttaaaggaattacagccattttttacagagtctctccattttcacagatttttttttgattattcAAGGGGTTGTCTTAGATCGatctcaaaagtaattggacggTTGACTGATAAGCAATTTCATGGCCatgtgtggcctgtttcctcattatttcatgacaaattaaggagatcaaagatctggagttgattccaaggaCTTACCTTTCTACCAAGCATAGAAAAATAATGTCATATTAGATGTAGGCATCAGGCCTAAAAGTAAGAGTCAACATAACCGTAGTTTCTGCTACCTGTTTCATGCTCTTAGAATTACACATGAAGCAACAGTGAATCATAACACAAGCTAACAGGAGGATGACAAAGAAAACCATGAAACAGTCGAATTTCACCATTTGCCACCAGGAACGTAGCCAGGCACCTAACCAGTCACTGTCAACTGATCGACACACTTAACATGGCCATGCATCTCATCTAGATCTATACACTATGCACAATAGGACAACTAGGCTTCTTGATATACCTAATCAAATAACCCTGAGGTGCAGTGGCCGCATATGTAATGTTATATAACATGAAACCAGTGACTGTGTCTAAATTGTATCCAGTGATACTGCCTGATTAATTAATCTATAGAATCAGTCTTTTGTGCGGTGATGATGGCAAAGACGGATGGGTCTTGCTTCAGCACAGCGTGGACAGGGTTGAAGTGTGTCCTGGGGCCAGTTAGGAGTGAGTGGAAACCGATGGATGCAGTAGAAGACTTTTGGTTTTCTCGTAGCACCTGCACCAACTTCATATACGCCTCACCTGGTTTCTCCTgcaaaaaaccccacaaacacacacacacacacacacacacacgacagcaGTATCTTACAGCAGACACAGAAgcatcttttccttttttccagaACTTCAAAAAGATTTGTTTTCTCTCCAAATCTTTTATTGAAAACACATATATAGACTGGAATTTAACCAGATATTGTAGGCTCAAATGTTGCATAAATTAACACTATAAGGGGTTACTGTCTCTCCCTGCCTAACTTGGGTCCTGTCCACTGAGAGGAGTAGGGAGCGCTAATCGCATTTTGGGGAAAAGGGAATCTTCACTTTGAGTTTAACCCCCGCGGCCTAAATGCCATCGGATCCTCTCAAACTGACACAACACTGCCGAAACAGTTACTAAGAGAACTTGGAAAGGGCCTTTCCATTTTGCCTCTAACCAGCTGTGTGGTTTTTGATCATTACCAACTGTCCTGGCACAATAGCATGTCCCCACAATAGCACGTTTTTAGGGGAGGTCCATGCCTCCTGGACATGCTGTTGCGCAGCACTAACAGCTTCAGTGAGCTCTTCACAATACTTCATTAGCGCATTAGAGGTAAGATGCACATTTGCTTGTCTTAGATCGATTGTCCCCGGTAGGGCCATTGGTCGACCCATAATGATCCCGTATGGGCTGAGACCCCTCTCATAGATGTGGATCAAATACTGCACAAAACAGCTGGCAACGCATCCACCCACAACACCCCACTCTGGTGTAACTATGACAATCGCTGTTTCAAAGTCTGATTTTGACACTCGACCTGTCCAGAAGCCTGAGGCCTATATGGGCAGTGAAACGTCCATTGAACATTCAACATTTTCATGACTTCCTGCATGACTTGGGCAGTAAAGTGAGTTCTGTGGTCTGAATGAATGCACTGGTCTGAATGAATGGCTATCCCTGTTTTGGTTGGAAAGGCTTCAAACCCAATGTGAAAACTTATCAACCACCACCAACACATCCTGTTTACCTTGACACGGGGAAAATAATCCCACAGACCCTACTGTAAAtgttcacccccttgaacttttccacattttgcagtGATACAAAACTGAAATGGACCTAACTGGGATTTTAGGTCATGAATCGACACAAAATAACCAATAATATTCAAGTGGGAAAAAACCAATAAAGTTTgccaaattatttacaaataaaaatataaaaggtgTGATTGCATAAGCATTCTGTTGTGAGTATAAGTAGTCTTGCTGTGAAatccctaaattagttcttttGGAAAGACACATGGTTACCGTGTcacattaatattttgtcagtagctgaATTTACAGCCCGCTAGTTtgacaatatttatatatatatgtatatatttgttgaCATGAGCGGTTACAGGTTTTGGGATTTTTCACTGCACTCAGATGAGAGAATAcaacttttcttctttctgaatCTTTTTGTAAACTGTAAGAGCAGGAGCGAACGCTTTGAAAATAAAGCCTGTACACGTATCTACAGGCACTTTAGATTCAATATATTGAATCTCCTGTTCATCTTGTTTTTTAGGACCTAAGAGTATTGCTTTCTTAAtgttacacacaaacatgtgaTAATGGACCATGGTCATAGTGCTGATGGAGGAACTGTCATCGGCAATAAAGATAATTTGGCTCTCAGGAGTTAAGTACTTGTACACCATGACATTTTCAGCAGTAAAGCATGGATAATCGCTGTGTTCTGCCATGTTTATAATTGAGATCTGGTCCAATATGTTCTTTAACTCTTCTTTACGGTCATTACATTGTCTCATTGCCCAGTCAAGAAGCAGGTCATCCtttgattttttcttcttttccttctggCATTTTgacttttccctcttttttgtAGCTTCAGTCTGATCTTTCACATCTCTGTTTGGAGCTAGTATGGCTGTGTTTTTATACTGAGCCAAGAACTCTGTGCTATTGCTTTGTGTATACTTTGATGCTGAGCCTGGACTGTTGTCCTGCAGCTGCTTCGAAGAAAAAGGCTCAGGATTAACCTGCATATTTGCTTGCTCATTGTGCTGCATGTTCATGTTTCCACATCTGTCTTCTAGtggcattttgtttttgatgatTGACTCATCTTGGTGCAGACATGCAGCATGCATTGGAACATTTGATTTTTGATGTTCCTCATCTATCTTATCATTGTGTGTATTCTGCATGTCTGTGCTTCCAAGTCCATCTTCTAGTGGTGTTTCTTTTTTGGTGATTTGATCCTTTTGGTGCAGAGATTCCTCTTTATGCATTGGAACATTTGATCTTTTAAGTTGCTCATCTATCTTATCAGTCCATGGTTCCTTCATGTCTGTACTTCCAAGTCCATCTTCTAGTGGTTCTTTTTTGATGAGTGGGTTGTATTGGGACAGCGATACATCTATATGTCTTGGGACATTTGGAACATTGAATCTTTGAGGTTGCTCTTTCATCTCATGAATGCGTGTTTCCTGCATGTCCGTGCTTCCACATCTGTTTTCTAGTGGTGTTTCTTTTTTGGTGAATGGGTCATtttggtacagagataaatCTTCATACATTGGAACATTTGATCTTTGAGATTGTTCTTCCTTTTCATCAATGTGTGTACCCTGCATGTCTGTAGGTTCCTGTGATGGTGCATCAGCTTTGACCTCATGGTGCATTTGGAGGAATGATCCACCACAGGGCTGTTCAGTGGTTTTGGACTCATTCTCATTGTCTTTATTCTCATGAATCATAATATCcttgtctccagtgtcactgaaCACAGCCAGGACTTCCTCCTCTGGTaatcttttattgttttgtggCAAATACTCTAAACTGGTAGAGTAGCTATACTTTGATGCTGAGCCTGGACTGTTGTCCTGCAGCTGCTTCGAAGAAAAAGGCTCAGGATTAACCTGCATATTTGCTTGCTCATTGTGCTGCATGTTCATGTTTCCACATCTGTCTTCTAGtggcattttgtttttgatgatTGACTCATCTTGGTGCAGAGATGCAATATGCATTGGAACATTTGATCTTTGAGACTCCTCATCTATCTCATCAATGTTTGCGTCCTGCATGTCCGTGCTTCCAAGTCTATCTTCTAGTGGTGTTTCTTTTTTGGTGATTTGCTCCTTTTGGTGCAGAGATTCATCTTCATGCATTGGAACATTTGATCTTTTAAGTTGCTCATCTATCTTATCAGTCCATGGTTCCTTCATGTCTGTACTTCCAAGATCATCTtctagtggtttttttttggtgaatggGTCGTATTGGGACAGCGATACATCTATATGTCTTGGGACATTTGGAACATTGAATCTTTGAGGTTGCTCTTTCATCTCATGAATGCGTGTTTCCTGCATGTCTGAGCTTTGAGCATTATTTCCTGATGACACAGAACCACCTTTCTTAAAAAACATGCTAAATGTCAGTTTAGGAATTtctgtgttatttgttttgctgAGAAACTTGTCAAGTTCCTTATTTTTCCTGATGTTATCAATATTGTTAGCATTGaagcataaaatatttttgggtTCTTtgtcctttaatttttttttcaaatctgcCATGCCTTTATCGCCAAGTTGTCTCTCCAAGTCACTAATCAGCTTTTGGCTGATTTCTGGTTCAGACACCCATCTCTCCAGTTTGGCGAATGTTGATATCCTCTTAAGA
>TU353305
GTTTATTTGAAAGCTACTGCATGcaataacaaaaatgataaGTAAAATTGTATTAATACAGTAccttacttttatttatacaatacagcagggtccataagtatttagacagtgacagagttttcataatccacaatggatttgaaatgaagcaatcaagatgtgattgaagtggagactttcagctttaattcgaGGGGTTTAaccaaaatattgcattaactgttaaaggaattacagccattttttacagagtctctccattttcacagatttttttttgattattcAAGGGGTTGTCTTAGATCGatctcaaaagtaattggacggTTGACTGATAAGCAATTTCATGGCCatgtgtggcctgtttcctcattatttcatgacaaattaaggagatcaaagatctggagttgattccaaggaCTTACCTTTCTACCAAGCATAGAAAAATAATGTCATATTAGATGTAGGCATCAGGCCTAAAAGTAAGAGTCAACATAACCGTAGTTTCTGCTACCTGTTTCATGCTCTTAGAATTACACATGAAGCAACAGTGAATCATAACACAAGCTAACAGGAGGATGACAAAGAAAACCATGAAACAGTCGAATTTCACCATTTGCCACCAGGAACGTAGCCAGGCACCTAACCAGTCACTGTCAACTGATCGACACACTTAACATGGCCATGCATCTCATCTAGATCTATACACTATGCACAATAGGACAACTAGGCTTCTTGATATACCTAATCAAATAACCCTGAGGTGCAGTGGCCGCATATGTAATGTTATATAACATGAAACCAGTGACTGTGTCTAAATTGTATCCAGTGATACTGCCTGATTAATTAATCTATAGAATCAGTCTTTTGTGCGGTGATGATGGCAAAGACGGATGGGTCTTGCTTCAGCACAGCGTGGACAGGGTTGAAGTGTGTCCTGGGGCCAGTTAGGAGTGAGTGGAAACCGATGGATGCAGTAGAAGACTTTTGGTTTTCTCGTAGCACCTGCACCAACTTCATATACGCCTCACCTGGTTTCTCCTgcaaaaaaccccacaaacacacacacacacacacacacacacgacagcaGTATCTTACAGCAGACACAGAAgcatcttttccttttttccagaACTTCAAAAAGATTTGTTTTCTCTCCAAATCTTTTATTGAAAACACATATATAGACTGGAATTTAACCAGATATTGTAGGCTCAAATGTTGCATAAATTAACACTATAAGGGGTTACTGTCTCTCCCTGCCTAACTTGGGTCCTGTCCACTGAGAGGAGTAGGGAGCGCTAATCGCATTTTGGGGAAAAGGGAATCTTCACTTTGAGTTTAACCCCCGCGGCCTAAATGCCATCGGATCCTCTCAAACTGACACAACACTGCCGAAACAGTTACTAAGAGAACTTGGAAAGGGCCTTTCCATTTTGCCTCTAACCAGCTGTGTGGTTTTTGATCATTACCAACTGTCCTGGCACAATAGCATGTCCCCACAATAGCACGTTTTTAGGGGAGGTCCATGCCTCCTGGACATGCTGTTGCGCAGCACTAACAGCTTCAGTGAGCTCTTCACAATACTTCATTAGCGCATTAGAGGTAAGATGCACATTTGCTTGTCTTAGATCGATTGTCCCCGGTAGGGCCATTGGTCGACCCATAATGATCCCGTATGGGCTGAGACCCCTCTCATAGATGTGGATCAAATACTGCACAAAACAGCTGGCAACGCATCCACCCACAACACCCCACTCTGGTGTAACTATGACAATCGCTGTTTCAAAGTCTGATTTTGACACTCGACCTGTCCAGAAGCCTGAGGCCTATATGGGCAGTGAAACGTCCATTGAACATTCAACATTTTCATGACTTCCTGCATGACTTGGGCAGTAAAGTGAGTTCTGTGGTCTGAATGAATGCACTGGTCTGAATGAATGGCTATCCCTGTTTTGGTTGGAAAGGCTTCAAACCCAATGTGAAAACTTATCAACCACCACCAACACATCCTGTTTACCTTGACACGGGGAAAATAATCCCACAGACCCTACTGTAAAtgttcacccccttgaacttttccacattttgcagtGATACAAAACTGAAATGGACCTAACTGGGATTTTAGGTCATGAATCGACACAAAATAACCAATAATATTCAAGTGGGAAAAAACCAATAAAGTTTgccaaattatttacaaataaaaatataaaaggtgTGATTGCATAAGCATTCTGTTGTGAGTATAAGTAGTCTTGCTGTGAAatccctaaattagttcttttGGAAAGACACATGGTTACCGTGTcacattaatattttgtcagtagctgaATTTACAGCCCGCTAGTTtgacaatatttatatatatatgtatatatttgttgaCATGAGCGGTTACAGGTTTTGGGATTTTTCACTGCACTCAGATGAGAGAATAcaacttttcttctttctgaatCTTTTTGTAAACTGTAAGAGCAGGAGCGAACGCTTTGAAAATAAAGCCTGTACACGTATCTACAGGCACTTTAGATTCAATATATTGAATCTCCTGTTCATCTTGTTTTTTAGGACCTAAGAGTATTGCTTTCTTAAtgttacacacaaacatgtgaTAATGGACCATGGTCATAGTGCTGATGGAGGAACTGTCATCGGCAATAAAGATAATTTGGCTCTCAGGAGTTAAGTACTTGTACACCATGACATTTTCAGCAGTAAAGCATGGATAATCGCTGTGTTCTGCCATGTTTATAATTGAGATCTGGTCCAATATGTTCTTTAACTCTTCTTTACGGTCATTACATTGTCTCATTGCCCAGTCAAGAAGCAGGTCATCCtttgattttttcttcttttccttctggCATTTTgacttttccctcttttttgtAGCTTCAGTCTGATCTTTCACATCTCTGTTTGGAGCTAGTATGGCTGTGTTTTTATACTGAGCCAAGAACTCTGTGCTATTGCTTTGTGTATACTTTGATGCTGAGCCTGGACTGTTGTCCTGCAGCTGCTTCGAAGAAAAAGGCTCAGGATTAACCTGCATATTTGCTTGCTCATTGTGCTGCATGTTCATGTTTCCACATCTGTCTTCTAGtggcattttgtttttgatgatTGACTCATCTTGGTGCAGACATGCAGCATGCATTGGAACATTTGATTTTTGATGTTCCTCATCTATCTTATCATTGTGTGTATTCTGCATGTCTGTGCTTCCAAGTCCATCTTCTAGTGGTGTTTCTTTTTTGGTGATTTGATCCTTTTGGTGCAGAGATTCCTCTTTATGCATTGGAACATTTGATCTTTTAAGTTGCTCATCTATCTTATCAGTCCATGGTTCCTTCATGTCTGTACTTCCAAGTCCATCTTCTAGTGGTTCTTTTTTGATGAGTGGGTTGTATTGGGACAGCGATACATCTATATGTCTTGGGACATTTGGAACATTGAATCTTTGAGGTTGCTCTTTCATCTCATGAATGCGTGTTTCCTGCATGTCCGTGCTTCCACATCTGTTTTCTAGTGGTGTTTCTTTTTTGGTGAATGGGTCATtttggtacagagataaatCTTCATACATTGGAACATTTGATCTTTGAGATTGTTCTTCCTTTTCATCAATGTGTGTACCCTGCATGTCTGTAGGTTCCTGTGATGGTGCATCAGCTTTGACCTCATGGTGCATTTGGAGGAATGATCCACCACAGGGCTGTTCAGTGGTTTTGGACTCATTCTCATTGTCTTTATTCTCATGAATCATAATATCcttgtctccagtgtcactgaaCACAGCCAGGACTTCCTCCTCTGGTaatcttttattgttttgtggCAAATACTCTAAACTGGTAGAGTAGCTATACTTTGATGCTGAGCCTGGACTGTTGTCCTGCAGCTGCTTCGAAGAAAAAGGCTCAGGATTAACCTGCATATTTGCTTGCTCATTGTGCTGCATGTTCATGTTTCCACATCTGTCTTCTAGtggcattttgtttttgatgatTGACTCATCTTGGTGCAGAGATGCAATATGCATTGGAACATTTGATCTTTGAGACTCCTCATCTATCTCATCAATGTTTGCGTCCTGCATGTCCGTGCTTCCAAGTCTATCTTCTAGTGGTGTTTCTTTTTTGGTGATTTGCTCCTTTTGGTGCAGAGATTCATCTTCATGCATTGGAACATTTGATCTTTTAAGTTGCTCATCTATCTTATCAGTCCATGGTTCCTTCATGTCTGTACTTCCAAGATCATCTtctagtggtttttttttggtgaatggGTCGTATTGGGACAGCGATACATCTATATGTCTTGGGACATTTGGAACATTGAATCTTTGAGGTTGCTCTTTCATCTCATGAATGCGTGTTTCCTGCATGTCTGAGCTTTGAGCATTATTTCCTGATGACACAGAACCACCTTTCTTAAAAAACATGCTAAATGTCAGTTTAGGAATTtctgtgttatttgttttgctgAGAAACTTGTCAAGTTCCTTATTTTTCCTGATGTTATCAATATTGTTAGCATTGaagcataaaatatttttgggtTCTTtgtcctttaatttttttttcaaatctgcCATGCCTTTATCGCCAAGTTGTCTCTCCAAGTCACTAATCAGCTTTTGGCTGATTTCTGGTTCAGACACCCATCTCTCCAGTTTGGCGAATGTTGATATCCTCTTAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353304 True 4724 lncRNA 0.40 2 19277871 19283479
TU353305 False 4724 lncRNA 0.40 2 19277871 19283479

Neighbor

gene id symbol gene type direction distance location
LOC113547657 LOC108257673 coding upstream 13783 19254036 ~ 19264088 (+)
LOC113547660 NA coding upstream 28540 19241547 ~ 19249331 (+)
si:dkeyp-55f12.3 NA coding upstream 190667 19085708 ~ 19087204 (+)
btbd7 LOC108257833 coding upstream 213428 19038213 ~ 19064443 (+)
prima1 LOC108257636 coding upstream 289215 18953582 ~ 18988656 (+)
LOC117599671 NA coding downstream 45746 19329225 ~ 19329925 (+)
LOC113524710 NA coding downstream 82527 19366006 ~ 19366943 (+)
LOC117599700 NA coding downstream 84853 19368332 ~ 19466148 (+)
LOC117599704 NA coding downstream 97846 19381325 ~ 19402770 (+)
LOC117599701 NA coding downstream 195675 19479154 ~ 19480718 (+)
G298237 NA non-coding upstream 51165 19226317 ~ 19226706 (+)
G298231 NA non-coding upstream 57736 19219009 ~ 19220135 (+)
G298230 NA non-coding upstream 60670 19216559 ~ 19217201 (+)
G298215 NA non-coding upstream 86318 19188901 ~ 19191553 (+)
G298195 NA non-coding upstream 134890 19140739 ~ 19142981 (+)
G298377 NA non-coding downstream 4179 19287658 ~ 19287896 (+)
G298378 NA non-coding downstream 5987 19289466 ~ 19289738 (+)
G298381 NA non-coding downstream 11884 19295363 ~ 19295608 (+)
G298397 NA non-coding downstream 41705 19325184 ~ 19325434 (+)
G298398 NA non-coding downstream 42923 19326402 ~ 19326809 (+)
itpk1a itpk1,LOC108257830 other upstream 140258 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 749672 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1031814 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 1335693 17854724 ~ 17942178 (+)
max max,LOC107721316 other upstream 1470694 17789100 ~ 17807177 (+)
G298379 NA other downstream 6506 19289985 ~ 19290539 (+)
G298409 NA other downstream 118070 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 799027 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1542210 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 2049786 21333265 ~ 21336047 (+)

Expression


Co-expression Network