LOC117599671


Basic Information

Item Value
gene id LOC117599671
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19329225 ~ 19329925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580076.1
CTACCGCCACCCACTGGACACCCATTGCCTAGCTTGTGTTTGCAGCAGACATCATTGTGCACTATGATCTTCTACCACCATCACTGTTCATCAACAGGAATCTGTACTTTCACTGAAGGAATCTAACCTTGAACCATTGAAACAATCTACTTTCTTACCCATCTACAATGCTAGGCTGACCTAAGGTATGGt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580076.1 True 192 ncRNA 0.44 3 19329225 19329925

Neighbor

gene id symbol gene type direction distance location
LOC113547657 LOC108257673 coding upstream 65137 19254036 ~ 19264088 (+)
LOC113547660 NA coding upstream 79894 19241547 ~ 19249331 (+)
si:dkeyp-55f12.3 NA coding upstream 242021 19085708 ~ 19087204 (+)
btbd7 LOC108257833 coding upstream 264782 19038213 ~ 19064443 (+)
prima1 LOC108257636 coding upstream 340569 18953582 ~ 18988656 (+)
LOC113524710 NA coding downstream 36081 19366006 ~ 19366943 (+)
LOC117599700 NA coding downstream 38407 19368332 ~ 19466148 (+)
LOC117599704 NA coding downstream 51400 19381325 ~ 19402770 (+)
LOC117599701 NA coding downstream 149229 19479154 ~ 19480718 (+)
LOC113523955 NA coding downstream 161013 19490938 ~ 19492516 (+)
G298398 NA non-coding upstream 2416 19326402 ~ 19326809 (+)
G298397 NA non-coding upstream 3791 19325184 ~ 19325434 (+)
G298381 NA non-coding upstream 33617 19295363 ~ 19295608 (+)
G298378 NA non-coding upstream 39487 19289466 ~ 19289738 (+)
G298377 NA non-coding upstream 41329 19287658 ~ 19287896 (+)
LOC117599707 NA non-coding downstream 93094 19423019 ~ 19423610 (+)
G298427 NA non-coding downstream 200722 19530647 ~ 19530931 (+)
G298477 NA non-coding downstream 307120 19637045 ~ 19637379 (+)
G298476 nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223 non-coding downstream 308162 19638087 ~ 20069565 (+)
LOC117599710 NA non-coding downstream 424859 19754784 ~ 19755374 (+)
G298379 NA other upstream 38686 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 191612 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 801026 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1083168 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 1387047 17854724 ~ 17942178 (+)
G298409 NA other downstream 71624 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 752581 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1495764 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 2003340 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 2378433 21708358 ~ 21719463 (+)

Expression


Co-expression Network