prima1 (LOC108257636)


Basic Information

Item Value
gene id prima1
gene name LOC108257636
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18953582 ~ 18988656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026948103.2
aatgaagggtgccaataattatgacGCTGCCTCAGTATCAGTGGTACTATAAGTGAGAATATAAGGCAGGACTGCACtgctgtacagtgtgtatgaaACAGTGAGGAAGACGCTGAGAACCCTGCGCTACaggctgatgatgatgtgatgatagcGCGTccttagttatttatttatttagttgatgttattttttgctttttgcgtCTCGGGGCGGCGCTTCAGAAGTGATGAAACGTTCCGCGTGCACTTCGGCTTGCGAGCTCGCGCGGAGCGTCGCGTCTGCACAGCGCACAGCGCAAACTTTAGCGCCGATTAATCGCGCAGCCGTATCAGACCGACCGGCGACTGACGCGCGCGCCGAGCAGCGATGAGTCCCGGAGAACTTCACGGTCCGGGCCGCGCGCGCCGGCAGCGTGTGTGAGTTTACACGGATTCGCCGTCGCTCGGACCCCGCGCGCGCTCTTCCCTTCTCTTCTTCATGCCACCCACTAATGACAGAGGTGGGCGACAATGTTCGGGGTTCAGAGTAGCGAGCAGCTCGCGAGGAAGTGCGCCGTCGCCGCCGCCGCCGATCAGCTCGCGACGCTGCGTTGAATCCGTCCGAGCGGAAGAGTTTCGCGGCGCGCGCCGGACCGTCAACCCACCGCAAGGATGCGGGGCCGAGATTATTTCACGCTCACTTTGGGCTTTGTGCCTTTTCTGCTCAGCCACTGCTTCCTCTTCTCTGCGCTACTGCAGCACGCTCATGGAGAGCTGCGGAAGTCCTGCTCTGGAACCCCCGCTGTGCGCCTGGAGGACACCTGCCACCTGCCCTGTCACTGCAGACCATACCCACTGctacctccacctcctcctccaccacctccacccAGACTCTTCTCTCCTACAgTAGCTCCATCCAGTGTGTCTCCTCCTGTGAAGCCCTGGGGAAGAGAGGTGGAGATTTTGGTGCTGGGGACGGTGAGCTGTGCATCAGTCGTCTTCCTTTTCCTCACGGTCATCATCTGCTACAAAACTATCAAGAGGAAACCACTGCGGAAAGAGGAGAACGGCACCAGCCGAGGGGAATACGCCATGAGCGCTCGCTGCAAGCAGACGGCGGTGGAGACCAACAACACTGGAGTATAGCAGCCAGAGGAAAACACACTGACGCTCCGTCATAAACAGGAGCTTAAAGGGCTTCGGAGATGGAGAAATAGTATTAAAGGAAGGATTGATGGAGCTCTGAACCACGGCTTTGTTcaacttctttaaaaaaaaaacacttaaatgaCAATAAGAGCTGCTTTATGATTGATATGTGACAGAATAAAAA
>XM_034313933.1
tGTTGTATgtaatgaagggtgccaataattatgacGCTGCCTCAGTATCAGTGGTACTATAAGTGAGAATATAAGGCAGGACTGCACtgctgtacagtgtgtatgaaACAGTGAGGAAGACGCTGAGAACCCTGCGCTACaggctgatgatgatgtgatgatagcGCGTccttagttatttatttatttagttgatgttattttttgctttttgcgtCTCGGGGCGGCGCTTCAGAAGTGATGAAACGTTCCGCGTGCACTTCGGCTTGCGAGCTCGCGCGGAGCGTCGCGTCTGCACAGCGCACAGCGCAAACTTTAGCGCCGATTAATCGCGCAGCCGTATCAGACCGACCGGCGACTGACGCGCGCGCCGAGCAGCGATGAGTCCCGGAGAACTTCACGGTCCGGGCCGCGCGCGCCGGCAGCGTGTGTGAGTTTACACGGATTCGCCGTCGCTCGGACCCCGCGCGCGCTCTTCCCTTCTCTTCTTCATGCCACCCACTAATGACAGAGGTGGGCGACAATGTTCGGGGTTCAGAGTAGCGAGCAGCTCGCGAGGAAGTGCGCCGTCGCCGCCGCCGCCGATCAGCTCGCGACGCTGCGTTGAATCCGTCCGAGCGGAAGAGTTTCGCGGCGCGCGCCGGACCGTCAACCCACCGCAAGGATGCGGGGCCGAGATTATTTCACGCTCACTTTGGGCTTTGTGCCTTTTCTGCTCAGCCACTGCTTCCTCTTCTCTGCGCTACTGCAGCACGCTCATGGAGAGCTGCGGAAGTCCTGCTCTGGAACCCCCGCTGTGCGCCTGGAGGACACCTGCCACCTGCCCTGTCACTGCAGACCATACCCACTGctacctccacctcctcctccaccacctccacccAGACTCTTCTCTCCTACAgCTCCATCCAGTGTGTCTCCTCCTGTGAAGCCCTGGGGAAGAGAGGTGGAGATTTTGGTGCTGGGGACGGTGAGCTGTGCATCAGTCGTCTTCCTTTTCCTCACGGTCATCATCTGCTACAAAACTATCAAGAGGAAACCACTGCGGAAAGAGGAGAACGGCACCAGCCGAGGGGAATACGCCATGAGCGCTCGCTGCAAGCAGACGGCGGTGGAGACCAACAACACTGGAGTATAGCAGCCAGAGGAAAACACACTGACGCTCCGTCATAAACAGGAGCTTAAAGGGCTTCGGAGATGGAGAAATAGTATTAAAGGAAGGATTGATGGAGCTCTGAACCACGGCTTTGTTcaacttctttaaaaaaaaaacacttaaatgaCAATAAGAGCTGCTTTATGATTGATATGTGACAGAATAAAAA

Function

NR:

description
proline-rich membrane anchor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026948103.2 False 1318 mRNA 0.55 4 18953592 18988656
XM_034313933.1 True 1325 mRNA 0.55 4 18953582 18988656

Neighbor

gene id symbol gene type direction distance location
asb2a.1 asb2 coding upstream 16296 18917462 ~ 18937286 (+)
asb2a.2 NA coding upstream 38918 18906552 ~ 18914664 (+)
LOC113547694 LOC108257617 coding upstream 49257 18895076 ~ 18904325 (+)
serpina10a LOC108258118 coding upstream 95710 18851631 ~ 18857872 (+)
prph2lb LOC108258119,LOC108424527,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225 coding upstream 103690 18845660 ~ 18849892 (+)
btbd7 LOC108257833 coding downstream 49557 19038213 ~ 19064443 (+)
si:dkeyp-55f12.3 NA coding downstream 97052 19085708 ~ 19087204 (+)
LOC113547660 NA coding downstream 252891 19241547 ~ 19249331 (+)
LOC113547657 LOC108257673 coding downstream 265380 19254036 ~ 19264088 (+)
LOC117599671 NA coding downstream 340569 19329225 ~ 19329925 (+)
G298128 NA non-coding upstream 89996 18863000 ~ 18863586 (+)
G298036 NA non-coding upstream 224180 18728974 ~ 18729402 (+)
G297973 NA non-coding upstream 377226 18575992 ~ 18576356 (+)
G297650 NA non-coding upstream 699954 18253426 ~ 18253628 (+)
G297632 chac1 non-coding upstream 701158 18250282 ~ 18252424 (+)
G298150 NA non-coding downstream 13684 19002340 ~ 19066945 (+)
G298151 NA non-coding downstream 59374 19048030 ~ 19068115 (+)
G298163 NA non-coding downstream 70640 19059296 ~ 19059584 (+)
G298174 NA non-coding downstream 98602 19087258 ~ 19088413 (+)
G298187 NA non-coding downstream 121931 19110587 ~ 19110814 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 425383 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 707525 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 1011404 17854724 ~ 17942178 (+)
max max,LOC107721316 other upstream 1146405 17789100 ~ 17807177 (+)
syne1a LOC108257639 other upstream 1474311 17252099 ~ 17479271 (+)
itpk1a itpk1,LOC108257830 other downstream 107296 19095952 ~ 19137613 (+)
G298379 NA other downstream 301329 19289985 ~ 19290539 (+)
G298409 NA other downstream 412893 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 1093850 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1837033 20825689 ~ 20838690 (+)

Expression


Co-expression Network