RNA id: XM_034313933.1


Basic Information

Item Value
RNA id XM_034313933.1
length 1325
RNA type mRNA
GC content 0.55
exon number 4
gene id prima1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18953582 ~ 18988656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tGTTGTATgtaatgaagggtgccaataattatgacGCTGCCTCAGTATCAGTGGTACTATAAGTGAGAATATAAGGCAGGACTGCACtgctgtacagtgtgtatgaaACAGTGAGGAAGACGCTGAGAACCCTGCGCTACaggctgatgatgatgtgatgatagcGCGTccttagttatttatttatttagttgatgttattttttgctttttgcgtCTCGGGGCGGCGCTTCAGAAGTGATGAAACGTTCCGCGTGCACTTCGGCTTGCGAGCTCGCGCGGAGCGTCGCGTCTGCACAGCGCACAGCGCAAACTTTAGCGCCGATTAATCGCGCAGCCGTATCAGACCGACCGGCGACTGACGCGCGCGCCGAGCAGCGATGAGTCCCGGAGAACTTCACGGTCCGGGCCGCGCGCGCCGGCAGCGTGTGTGAGTTTACACGGATTCGCCGTCGCTCGGACCCCGCGCGCGCTCTTCCCTTCTCTTCTTCATGCCACCCACTAATGACAGAGGTGGGCGACAATGTTCGGGGTTCAGAGTAGCGAGCAGCTCGCGAGGAAGTGCGCCGTCGCCGCCGCCGCCGATCAGCTCGCGACGCTGCGTTGAATCCGTCCGAGCGGAAGAGTTTCGCGGCGCGCGCCGGACCGTCAACCCACCGCAAGGATGCGGGGCCGAGATTATTTCACGCTCACTTTGGGCTTTGTGCCTTTTCTGCTCAGCCACTGCTTCCTCTTCTCTGCGCTACTGCAGCACGCTCATGGAGAGCTGCGGAAGTCCTGCTCTGGAACCCCCGCTGTGCGCCTGGAGGACACCTGCCACCTGCCCTGTCACTGCAGACCATACCCACTGctacctccacctcctcctccaccacctccacccAGACTCTTCTCTCCTACAgCTCCATCCAGTGTGTCTCCTCCTGTGAAGCCCTGGGGAAGAGAGGTGGAGATTTTGGTGCTGGGGACGGTGAGCTGTGCATCAGTCGTCTTCCTTTTCCTCACGGTCATCATCTGCTACAAAACTATCAAGAGGAAACCACTGCGGAAAGAGGAGAACGGCACCAGCCGAGGGGAATACGCCATGAGCGCTCGCTGCAAGCAGACGGCGGTGGAGACCAACAACACTGGAGTATAGCAGCCAGAGGAAAACACACTGACGCTCCGTCATAAACAGGAGCTTAAAGGGCTTCGGAGATGGAGAAATAGTATTAAAGGAAGGATTGATGGAGCTCTGAACCACGGCTTTGTTcaacttctttaaaaaaaaaacacttaaatgaCAATAAGAGCTGCTTTATGATTGATATGTGACAGAATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352992 lncRNA upstream 89996 18863000 ~ 18863586 (+) True G298128
TU352899 lncRNA upstream 224180 18728974 ~ 18729402 (+) True G298036
TU352823 lncRNA upstream 377226 18575992 ~ 18576356 (+) True G297973
TU352461 lncRNA upstream 699954 18253426 ~ 18253628 (+) True G297650
TU352442 lncRNA upstream 701158 18250282 ~ 18252424 (+) True G297632
TU353027 lncRNA downstream 13684 19002340 ~ 19066945 (+) True G298150
TU353031 lncRNA downstream 59374 19048030 ~ 19068115 (+) False G298151
TU353030 lncRNA downstream 59479 19048135 ~ 19068115 (+) True G298151
TU353043 lncRNA downstream 70640 19059296 ~ 19059584 (+) True G298163
TU353063 lncRNA downstream 98602 19087258 ~ 19088413 (+) True G298174
XM_026948096.2 mRNA upstream 16296 18917463 ~ 18937286 (+) True asb2a.1
XM_026948097.2 mRNA upstream 16296 18917463 ~ 18937286 (+) False asb2a.1
XM_026948098.2 mRNA upstream 17506 18917462 ~ 18936076 (+) False asb2a.1
XM_026948108.2 mRNA upstream 38918 18906552 ~ 18914664 (+) True asb2a.2
XM_034313738.1 mRNA upstream 38918 18908129 ~ 18914664 (+) False asb2a.2
XM_034313756.1 mRNA downstream 49557 19038213 ~ 19064443 (+) True btbd7
XM_026948157.2 mRNA downstream 97052 19085708 ~ 19087204 (+) True si:dkeyp-55f12.3
XM_034313793.1 mRNA downstream 107296 19095952 ~ 19137613 (+) True itpk1a
XM_034313489.1 mRNA downstream 252891 19241547 ~ 19249331 (+) False LOC113547660
XM_026948106.2 mRNA downstream 252892 19241548 ~ 19249331 (+) False LOC113547660
TU352782 other upstream 449319 18495783 ~ 18504263 (+) False syndig1l
TU352440 other upstream 758451 18186109 ~ 18195131 (+) False ino80
XR_004580105.1 other upstream 1015968 17854779 ~ 17937614 (+) False sipa1l1
TU352300 other upstream 1146413 17804219 ~ 17807169 (+) False max
TU351537 other upstream 2140789 16812117 ~ 16812793 (+) True G296863
TU353310 other downstream 301329 19289985 ~ 19290539 (+) True G298379
XR_004580076.1 other downstream 340569 19329225 ~ 19329925 (+) True LOC117599671
TU353352 other downstream 535997 19524653 ~ 19546734 (+) False G298409
LOC113523952 other downstream 557416 19546072 ~ 19547137 (+) True LOC113523952
TU353527 other downstream 1093901 20082557 ~ 20083019 (+) False LOC117599696

Expression Profile