asb2a.1 (asb2)


Basic Information

Item Value
gene id asb2a.1
gene name asb2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18917462 ~ 18937286 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026948096.2
ATGTGCACTCTGTAGACATGTCCTATAAACAGAGCAGGGACGCAGGGACGCTTCTGGCAGAAGACTCGAGCAGCAAAAAGCGAAAGAGAAAAGTGtttctgtaactttaacttttaattaaaaaaaaaaacctgacggAAAATTCAACTTCCAGAAGAAGGTTTCAACTTTCAGAAGAAGGACCCCGGACTCCATCATGGCGGCTGCCGGCGGGCCTGTACTCGGTGCCACCAATCCCACGCTGACCCACGATGACTTCTGCCTCTACGGCTACATGTCTGATGATGAACTGATGCAGCTGGCCATCGAGCGCAGTCTCACTGAGACCCAAAACAACTCCACGACGTCTTCAGCTGAAAACACGAAGAGCTCCGTTCCTCAGCGCAGGACAGAGATTCCCCGGCCGAATCAGCGCCAGACACCGCGGCCCGCTCCCGCCCCCTGTCCTGCAAACCCACCCAGGGATAAAAATGACCAGCAGTCTGTAACAGTGAGCCACTTCATCACCGGGAACGGGAAGCGAATGGTGGCGTATCGGAGATATGACGGGACTCTGATACAAGTCAAACCCGAGGAGGAAGAAGAAGTGGATCCTGTGCTGAAGGCAATCAGGGACGGAGATGTTGGAACTTTGAGAGGACTGATCAAAAAAGCAGACTGCAACCTTCTGATGCCAAACGAATACGGCTGGATTCCACTTCATGAGGCTGCGCACTACGGCCAAGAGCAGTGTATTAAAGCGATCCTGAGAGTCCAACCTGGGATGATTAACAAGCGCACGCTGAAGGATCAGACGGCTCTCCTGCTGGCCGTGTCGAGGGAGAACAAGGAGTGTGTGGCGTGTCTCCTGGAGAAAGGTGCAGATCCCGACATCGCCAACAAGGACAAGGAGACGCCTCTGTATAAAGCGTGTGAGAAGGAAAACCCAGCGATCGTGGCCATGCTGCTGAATCACGGCGCCACGGTGAACAAAAGCTGTATCCAGGGCTGGACGGCGCTGCACGAGGCCGTGTGCAGGAACAACGTGGAGATCTGTGAGATGTTAGTGAAGGCAGGGGCAAAAATTAGCACGCCCAACGTGTACGGCATCACCCCCATCTTCGTGGCGGCTCAGAGTGGGAACGTAGATACACTTCGGTTCCTCCTGAAAAACGGTGCTGATATCAACAGCCAGGCAGCAGATGGAGCCACGGCGCTTTATGAAGCCTGTAAGAACGGTCATGTGGAGATCGTGGAGTTCCTGCTGTCTCAAAAAGCCGACGCCAACAAACCGGGCAAAACCGGACTGCTGCCGATTCACATAGCAGCTCAGAGGGGAAACGATCGCACCGACCTCTTCACTTACGGGTCAGCACACAATACTGACAGGGCGCTTCAAATCGTGTCAATGCTCATCCCTGCCACCAGTAAGGCCCGTGTGAGGCGTAGCGGCATCAGTCCTCTCCATCTCGCCGCCGAGCGAAACCGAGACGAGATCCTCGAGCTGCTCATCGAGTCCGGCTTCGACGTCAACGCCACGCTGTCCGAGGACCGCAGCACCATGTACGAGGACCGCCGCAGCACCGCCCTCTACTTCTCCGTAATCAATAACAACATCGAAGCCACCAGCATGCTACTGCAGGCCGGCGCCGACCCCAACCTGGACACGTTCAGCCCTCTGCTCGTAGCCCTGAGGCAGGGCTGCATAAGGACCGTGACCTTACTGGTGGAATACGGCGCTAACATCAACGCCTACATCCCCACGCACCCCACCACCTTCCCCGCCACCGTCATGTTCTGCATGAAATACCTCACCGTGCTCAAGTACCTGATGGACAACGGCGGCGACGCGCTGTCGTGTTTCAGCTGCGTGTACGGCAGCGACCCTCACCCGCCTCTGAAAACGAGTCACAGCGACAGAACGCGCTACAGAGATGATCAACCTATATCACACAACACCTGCGTACAGTTCTGTGACATTGTCTCCACGGACACGTACAGCCCCTGGGCAGGACCCATCATAGACGTGCTGCTGGATTACGTAGGTGATGTGAAGCTCTGTTCCCGGCTCGTTGAACACTTGGACAGTTACGCTGACTGGGCCAGCATCAAGGAGAAAGCAAtgccTCCGCGGCCGCTCATGCAGCTCTGCAGGCTGAAGATCCGGAAGCTGATTGGAATCCACAGACtgaacaaaatcaaaaagtTGCCACTTCCTGGACGACTGATCAAATTCCTGAACCACGAGGAGCGCACACAAGATTTATGAGCCTCGTTAGGTGtgacagaaaacacagagaaagggaaagattaAACGAGGAAATAAGGACATTTACACTCTACAGcacttaggcacatgtaaagaaattctgtaaaagaagataaaaaataaCGAGATGTTATTaaagtaatattattaatgacTATAAAACCAAATCAAATCAATAATCAGTGTGATCGTTTGCATTTAAAGCCGCATCATTTCTCTCAGTTcgtacagttttataaggaaatcagctgctcctttttttcctgcatCTTGAACAACCTCTAAGGAgacttgcttctgtttctgcatCTAAAATCAGAACAGCTTCCGTTATGTTTTtgcccaaaaacaaaaaaatcctctATTACTGAATATAATACGTTCtttaacaacatacacacatttctgtctAAGATTTACTTTAATTCTGGAAGAACAAAATTATCTTCTGATTCAGAAGACAATAAAAACATCTAAGACTAAAGTTATAGACTATTActaaatctatatttatattattcaaatgattgttattatatttattaataatcattatatataacttatgacttttgcacaatgcctactgtattgtattgtaaataTCTTTAGAAATGCATTTGTCTAAATCAGATCTACAGatatgtgacaaattaaaggaaaacgcACAAACCAAACCAtctgaaatgcaaaaataaacgCCCCCACACAGCATACGAGAGCCACTGTGTTTACTTCGTCATGTGTCAGTACTCCtgtatgtattatgtgtgtatatattcttCAACCcattttatatgtacagtatgtgtgtgttaatttaaaTGGATTGTAGTTCGGAACAGTTACGATGCAATATTGGACTGAATTGCACTTAATTGTAGATAATTAGACATTAATTTCTACACTAGTTTTAATACAGTCTTAGaataaaaaggttaaatctagcaCTCTTAAGCGTTCTTGAGTTTGTTCCTCTACAGAaagtttctctttcagaaatggatccaagtagaacctttttagATGTTTAAAGAGCCCTTAAGATTTGGTTTAATAGTGAACTTGGAAGTGAAGTGGTTATCAATACAGTGGCCAAATACTGTGTTATTTGATGTAATAGTAATTAtttgatgctgaatgtaataaattaacattaaaatgctGAAGTATTTCCATTTTATTGTACACATTACTCTTAAATAAATCTGGA
>XM_026948097.2
ATGTGCACTCTGTAGACATGTCCTATAAACAGAGCAGGGACGCAGGGACGCTTCTGGCAGAAGACTCGAGCAGCAAAAAGCGAAAGAGAAAAGTGtttctgtaactttaacttttaattaaaaaaaaaaacctgacggAAAATTCAACTTCCAGAAGAAGGTTTCAACTTTCAGAAGAAGGACCCCGGACTCCATCATGGCGGCTGCCGGCGGGCCTGTACTCGGTGCCACCAATCCCACGCTGACCCACGATGACTTCTGCCTCTACGGCTACATGTCTGATGATGAACTGATGCAGCTGGCCATCGAGCGCAGTCTCACTGAGACCCAAAACAACTCCACGACGTCTTCAGCTGAAAACACGAAGAGCTCCGTTCCTCAGCGCAGGACAGAGATTCCCCGGCCGAATCAGCGCCAGACACCGCGGCCCGCTCCCGCCCCCTGTCCTGCAAACCCACCCAGGGATAAAAATGACCAGCAGTCTGTAACAGTGAGCCACTTCATCACCGGGAACGGGAAGCGAATGGTGGCGTATCGGAGATATGACGGGACTCTGATACAAGTCAAACCCGAGGAGGAAGAAGAAGTGGATCCTGTGCTGAAGGCAATCAGGGACGGAGATGTTGGAACTTTGAGAGGACTGATCAAAAAAGCAGACTGCAACCTTCTGATGCCAAACGAATACGGCTGGATTCCACTTCATGAGGCTGCGCACTACGGCCAAGAGCAGTGTATTAAAGCGATCCTGAGAGTCCAACCTGGGATGATTAACAAGCGCACGCTGAAGGATCAGACGGCTCTCCTGCTGGCCGTGTCGAGGGAGAACAAGGAGTGTGTGGCGTGTCTCCTGGAGAAAGGTGCAGATCCCGACATCGCCAACAAGGACAAGGAGACGCCTCTGTATAAAGCGTGTGAGAAGGAAAACCCAGCGATCGTGGCCATGCTGCTGAATCACGGCGCCACGGTGAACAAAAGCTGTATCCAGGGCTGGACGGCGCTGCACGAGGCCGTGTGCAGGAACAACGTGGAGATCTGTGAGATGTTAGTGAAGGCAGGGGCAAAAATTAGCACGCCCAACGTGTACGGCATCACCCCCATCTTCGTGGCGGCTCAGAGTGGGAACGTAGATACACTTCGGTTCCTCCTGAAAAACGGTGCTGATATCAACAGCCAGGCAGCAGATGGAGCCACGGCGCTTTATGAAGCCTGTAAGAACGGTCATGTGGAGATCGTGGAGTTCCTGCTGTCTCAAAAAGCCGACGCCAACAAACCGGGCAAAACCGGACTGCTGCCGATTCACATAGCAGCTCAGAGGGGAAACGATCGAATCGTGTCAATGCTCATCCCTGCCACCAGTAAGGCCCGTGTGAGGCGTAGCGGCATCAGTCCTCTCCATCTCGCCGCCGAGCGAAACCGAGACGAGATCCTCGAGCTGCTCATCGAGTCCGGCTTCGACGTCAACGCCACGCTGTCCGAGGACCGCAGCACCATGTACGAGGACCGCCGCAGCACCGCCCTCTACTTCTCCGTAATCAATAACAACATCGAAGCCACCAGCATGCTACTGCAGGCCGGCGCCGACCCCAACCTGGACACGTTCAGCCCTCTGCTCGTAGCCCTGAGGCAGGGCTGCATAAGGACCGTGACCTTACTGGTGGAATACGGCGCTAACATCAACGCCTACATCCCCACGCACCCCACCACCTTCCCCGCCACCGTCATGTTCTGCATGAAATACCTCACCGTGCTCAAGTACCTGATGGACAACGGCGGCGACGCGCTGTCGTGTTTCAGCTGCGTGTACGGCAGCGACCCTCACCCGCCTCTGAAAACGAGTCACAGCGACAGAACGCGCTACAGAGATGATCAACCTATATCACACAACACCTGCGTACAGTTCTGTGACATTGTCTCCACGGACACGTACAGCCCCTGGGCAGGACCCATCATAGACGTGCTGCTGGATTACGTAGGTGATGTGAAGCTCTGTTCCCGGCTCGTTGAACACTTGGACAGTTACGCTGACTGGGCCAGCATCAAGGAGAAAGCAAtgccTCCGCGGCCGCTCATGCAGCTCTGCAGGCTGAAGATCCGGAAGCTGATTGGAATCCACAGACtgaacaaaatcaaaaagtTGCCACTTCCTGGACGACTGATCAAATTCCTGAACCACGAGGAGCGCACACAAGATTTATGAGCCTCGTTAGGTGtgacagaaaacacagagaaagggaaagattaAACGAGGAAATAAGGACATTTACACTCTACAGcacttaggcacatgtaaagaaattctgtaaaagaagataaaaaataaCGAGATGTTATTaaagtaatattattaatgacTATAAAACCAAATCAAATCAATAATCAGTGTGATCGTTTGCATTTAAAGCCGCATCATTTCTCTCAGTTcgtacagttttataaggaaatcagctgctcctttttttcctgcatCTTGAACAACCTCTAAGGAgacttgcttctgtttctgcatCTAAAATCAGAACAGCTTCCGTTATGTTTTtgcccaaaaacaaaaaaatcctctATTACTGAATATAATACGTTCtttaacaacatacacacatttctgtctAAGATTTACTTTAATTCTGGAAGAACAAAATTATCTTCTGATTCAGAAGACAATAAAAACATCTAAGACTAAAGTTATAGACTATTActaaatctatatttatattattcaaatgattgttattatatttattaataatcattatatataacttatgacttttgcacaatgcctactgtattgtattgtaaataTCTTTAGAAATGCATTTGTCTAAATCAGATCTACAGatatgtgacaaattaaaggaaaacgcACAAACCAAACCAtctgaaatgcaaaaataaacgCCCCCACACAGCATACGAGAGCCACTGTGTTTACTTCGTCATGTGTCAGTACTCCtgtatgtattatgtgtgtatatattcttCAACCcattttatatgtacagtatgtgtgtgttaatttaaaTGGATTGTAGTTCGGAACAGTTACGATGCAATATTGGACTGAATTGCACTTAATTGTAGATAATTAGACATTAATTTCTACACTAGTTTTAATACAGTCTTAGaataaaaaggttaaatctagcaCTCTTAAGCGTTCTTGAGTTTGTTCCTCTACAGAaagtttctctttcagaaatggatccaagtagaacctttttagATGTTTAAAGAGCCCTTAAGATTTGGTTTAATAGTGAACTTGGAAGTGAAGTGGTTATCAATACAGTGGCCAAATACTGTGTTATTTGATGTAATAGTAATTAtttgatgctgaatgtaataaattaacattaaaatgctGAAGTATTTCCATTTTATTGTACACATTACTCTTAAATAAATCTGGA
>XM_026948098.2
CATGTGCACTCTGTAGACATGTCCTATAAACAGAGCAGGGACGCAGGGACGCTTCTGGCAGAAGACTCGAGCAGCAAAAAGCGAAAGAGAAAAGTGtttctgtaactttaacttttaattaaaaaaaaaaacctgacggAAAATTCAACTTCCAGAAGAAGGTTTCAACTTTCAGAAGAAGGACCCCGGACTCCATCATGGCGGCTGCCGGCGGGCCTGTACTCGGTGCCACCAATCCCACGCTGACCCACGATGACTTCTGCCTCTACGGCTACATGTCTGATGATGAACTGATGCAGCTGGCCATCGAGCGCAGTCTCACTGAGACCCAAAACAACTCCACGACGTCTTCAGCTGAAAACACGAAGAGCTCCGTTCCTCAGCGCAGGACAGAGATTCCCCGGCCGAATCAGCGCCAGACACCGCGGCCCGCTCCCGCCCCCTGTCCTGCAAACCCACCCAGGGATAAAAATGACCAGCAGTCTGTAACAGTGAGCCACTTCATCACCGGGAACGGGAAGCGAATGGTGGCGTATCGGAGATATGACGGGACTCTGATACAAGTCAAACCCGAGGAGGAAGAAGAAGTGGATCCTGTGCTGAAGGCAATCAGGGACGGAGATGTTGGAACTTTGAGAGGACTGATCAAAAAAGCAGACTGCAACCTTCTGATGCCAAACGAATACGGCTGGATTCCACTTCATGAGGCTGCGCACTACGGCCAAGAGCAGTGTATTAAAGCGATCCTGAGAGTCCAACCTGGGATGATTAACAAGCGCACGCTGAAGGATCAGACGGCTCTCCTGCTGGCCGTGTCGAGGGAGAACAAGGAGTGTGTGGCGTGTCTCCTGGAGAAAGGTGCAGATCCCGACATCGCCAACAAGGACAAGGAGACGCCTCTGTATAAAGCGTGTGAGAAGGAAAACCCAGCGATCGTGGCCATGCTGCTGAATCACGGCGCCACGGTGAACAAAAGCTGTATCCAGGGCTGGACGGCGCTGCACGAGGCCGTGTGCAGGAACAACGTGGAGATCTGTGAGATGTTAGTGAAGGCAGGGGCAAAAATTAGCACGCCCAACGTGTACGGCATCACCCCCATCTTCGTGGCGGCTCAGAGTGGGAACGTAGATACACTTCGGTTCCTCCTGAAAAACGGTGCTGATATCAACAGCCAGGCAGCAGATGGAGCCACGGCGCTTTATGAAGCCTGTAAGAACGGTCATGTGGAGATCGTGGAGTTCCTGCTGTCTCAAAAAGCCGACGCCAACAAACCGGGCAAAACCGGACTGCTGCCGATTCACATAGCAGCTCAGAGGGGAAACGATCGCACCGACCTCTTCACTTACGGGTCAGCACACAATACTGACAGGGCGCTTCAAATCGTGTCAATGCTCATCCCTGCCACCAGTAAGGCCCGTGTGAGGCGTAGCGGCATCAGTCCTCTCCATCTCGCCGCCGAGCGAAACCGAGACGAGATCCTCGAGCTGCTCATCGAGTCCGGCTTCGACGTCAACGCCACGCTGTCCGAGGACCGCAGCACCATGTACGAGGACCGCCGCAGCACCGCCCTCTACTTCTCCGTAATCAATAACAACATCGAAGCCACCAGCATGCTACTGCAGGCCGGCGCCGACCCCAACCTGGACACGTTCAGCCCTCTGCTCGTAGCCCTGAGGCAGGGCTGCATAAGGACCGTGACCTTACTGGTGGAATACGGCGCTAACATCAACGCCTACATCCCCACGCACCCCACCACCTTCCCCGCCACCGTCATGTTCTGCATGAAATACCTCACCGTGCTCAAGTACCTGATGGACAACGGCGGCGACGCGCTGTCGTGTTTCAGCTGCGTGTACGGCAGCGACCCTCACCCGCCTCTGAAAACGAGTCACAGCGACAGAACGCGCTACAGAGATGATCAACCTATATCACACAACACCTGCGTACAGTTCTGTGACATTGTCTCCACGGACACGTACAGCCCCTGGGCAGGACCCATCATAGACGTGCTGCTGGATTACGTAGGTGATGTGAAGCTCTGTTCCCGGCTCGTTGAACACTTGGACAGTTACGCTGACTGGGCCAGCATCAAGGAGAAAGCAAGTACGGCTAAACCCTCAGGCGTGAAAACTGCCGAGAAATCCAGCATGGTCAGACTGtgccTCCGCGGCCGCTCATGCAGCTCTGCAGGCTGAAGATCCGGAAGCTGATTGGAATCCACAGACtgaacaaaatcaaaaagtTGCCACTTCCTGGACGACTGATCAAATTCCTGAACCACGAGGAGCGCACACAAGATTTATGAGCC

Function

symbol description
asb2 Enables cullin family protein binding activity. Contributes to ubiquitin protein ligase activity. Involved in cardiac muscle cell differentiation; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Part of ubiquitin ligase complex.

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 2-like isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10324 ASB2; ankyrin repeat and SOCS box protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026948096.2 True 3461 mRNA 0.46 11 18917463 18937286
XM_026948097.2 False 3410 mRNA 0.46 10 18917463 18937286
XM_026948098.2 False 2308 mRNA 0.55 11 18917462 18936076

Neighbor

gene id symbol gene type direction distance location
asb2a.2 NA coding upstream 2798 18906552 ~ 18914664 (+)
LOC113547694 LOC108257617 coding upstream 13137 18895076 ~ 18904325 (+)
serpina10a LOC108258118 coding upstream 59590 18851631 ~ 18857872 (+)
prph2lb LOC108258119,LOC108424527,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225 coding upstream 67570 18845660 ~ 18849892 (+)
zbtb25 zbtb25 coding upstream 291610 18618477 ~ 18625852 (+)
prima1 LOC108257636 coding downstream 16296 18953582 ~ 18988656 (+)
btbd7 LOC108257833 coding downstream 100927 19038213 ~ 19064443 (+)
si:dkeyp-55f12.3 NA coding downstream 148422 19085708 ~ 19087204 (+)
LOC113547660 NA coding downstream 304261 19241547 ~ 19249331 (+)
LOC113547657 LOC108257673 coding downstream 316750 19254036 ~ 19264088 (+)
G298128 NA non-coding upstream 53876 18863000 ~ 18863586 (+)
G298036 NA non-coding upstream 188060 18728974 ~ 18729402 (+)
G297973 NA non-coding upstream 341106 18575992 ~ 18576356 (+)
G297650 NA non-coding upstream 663834 18253426 ~ 18253628 (+)
G297632 chac1 non-coding upstream 665038 18250282 ~ 18252424 (+)
G298150 NA non-coding downstream 65054 19002340 ~ 19066945 (+)
G298151 NA non-coding downstream 110744 19048030 ~ 19068115 (+)
G298163 NA non-coding downstream 122010 19059296 ~ 19059584 (+)
G298174 NA non-coding downstream 149972 19087258 ~ 19088413 (+)
G298187 NA non-coding downstream 173301 19110587 ~ 19110814 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 389263 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 671405 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 975284 17854724 ~ 17942178 (+)
max max,LOC107721316 other upstream 1110285 17789100 ~ 17807177 (+)
syne1a LOC108257639 other upstream 1438191 17252099 ~ 17479271 (+)
itpk1a itpk1,LOC108257830 other downstream 158666 19095952 ~ 19137613 (+)
G298379 NA other downstream 352699 19289985 ~ 19290539 (+)
G298409 NA other downstream 464263 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 1145220 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1888403 20825689 ~ 20838690 (+)

Expression


Co-expression Network