G298128


Basic Information

Item Value
gene id G298128
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18863000 ~ 18863586 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352992
ctacgcCCATCTACTCCTGtagaaactctgactacacccatctaaacctgcagaaactctgactacgcccatccactcctgcagaaactcgtgactacacccatccactcctgcagaaactctgactacacccatccactcctgcagaaactctgactacacccatccactcctgcagaaactctgaccaCGCCCACACGTAGCATGACTGGGACTGAAACCTGAATCTCATTTTGAACTAGACGGAACGTTATTGTCAGTTAGAACCTACTTCCCAGGCTGAACGTATTTTCTCTACAGTGTTGAGACGTACATGGAGAGTTTTCTGGACTGTGTGTctttgctgctgttgctgcgaTGCTCTACAGAGCTGCTCGTGTTGCTGCGGATCAGCACGGGCATGGACGAGGTGGAGGGAGTCTGGGACAGCGATGTGGACGAGGACGCCACGAAATGATGGGGTCTCAGGGCTTCATCTAGGACACAGAGAGGTGCAGACATGGAGGAAGGCTGTTAGACTGCAGAATTCTCTTCAGTGGTGCAGGCAGGCATGAAATGTAGGAACGTGAGAATGGGTTCTGTTGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU352992 True 587 lncRNA 0.51 1 18863000 18863586

Neighbor

gene id symbol gene type direction distance location
serpina10a LOC108258118 coding upstream 5128 18851631 ~ 18857872 (+)
prph2lb LOC108258119,LOC108424527,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225 coding upstream 13108 18845660 ~ 18849892 (+)
zbtb25 zbtb25 coding upstream 237148 18618477 ~ 18625852 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107668247,LOC107659178 coding upstream 678703 18170603 ~ 18184297 (+)
pigh pigh coding upstream 722849 18130872 ~ 18140151 (+)
LOC113547694 LOC108257617 coding downstream 31490 18895076 ~ 18904325 (+)
asb2a.2 NA coding downstream 42966 18906552 ~ 18914664 (+)
asb2a.1 asb2 coding downstream 53876 18917462 ~ 18937286 (+)
prima1 LOC108257636 coding downstream 89996 18953582 ~ 18988656 (+)
btbd7 LOC108257833 coding downstream 174627 19038213 ~ 19064443 (+)
G298036 NA non-coding upstream 133598 18728974 ~ 18729402 (+)
G297973 NA non-coding upstream 286644 18575992 ~ 18576356 (+)
G297650 NA non-coding upstream 609372 18253426 ~ 18253628 (+)
G297632 chac1 non-coding upstream 610576 18250282 ~ 18252424 (+)
G297631 NA non-coding upstream 675864 18186304 ~ 18187136 (+)
G298150 NA non-coding downstream 138754 19002340 ~ 19066945 (+)
G298151 NA non-coding downstream 184444 19048030 ~ 19068115 (+)
G298163 NA non-coding downstream 195710 19059296 ~ 19059584 (+)
G298174 NA non-coding downstream 223672 19087258 ~ 19088413 (+)
G298187 NA non-coding downstream 247001 19110587 ~ 19110814 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 334801 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 616943 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 920822 17854724 ~ 17942178 (+)
max max,LOC107721316 other upstream 1055823 17789100 ~ 17807177 (+)
syne1a LOC108257639 other upstream 1383729 17252099 ~ 17479271 (+)
itpk1a itpk1,LOC108257830 other downstream 232366 19095952 ~ 19137613 (+)
G298379 NA other downstream 426399 19289985 ~ 19290539 (+)
G298409 NA other downstream 537963 19401549 ~ 19546734 (+)
LOC117599696 NA other downstream 1218920 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1962103 20825689 ~ 20838690 (+)

Expression


Co-expression Network