RNA id: TU352300


Basic Information

Item Value
RNA id TU352300
length 1324
RNA type TUCP
GC content 0.44
exon number 2
gene id max
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17789100 ~ 17807177 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGACAGAACGCTCTGCTGGAACAGCAAGTTCGAGCACTGGAGAAGGTGAAGGGGACCACACAGCTGCAGGGCGGCTACTCCTCCTCAGACAGCAGCCTGTACACGAACCCTAAAGGCAGCGCCGTGTCGGCCTTCGACGGCGGCTCCGACTCCAGCTCCGAGTCAGAACCCGAGGAGCCGCCCACGAGGAAGAAGCTCCGCCAGGAGGCCAGCTAAGAGCAGCACCTCCTCCCGCTCTTCCAGCTTCTCCTCCGCTGCTCCCTCTTCCTCAGTGTGCACCAATCAGAGACTCCACAACTTCCTGTTTCGTGTCTTTTACAGGCTTCCCAGATGCCGGCCCACACCCTGACCCAGAACCAGACCCAGtcccagaaccagaaccagaaccagaccCACACCCAGGGAGCTAGGAGAGAAGGACTCGTAGCacacgtctctctctcctccgtcctccctccgtctctctctcgGGCCGGCTCAGCAGTAACAAGCAGCATCTCAAACCTACAACGAGGCAGCTTCGTGATTTACGGACTTGGCGCTTCTTCCGTACGTCCGTCCGTCGGTACGACGTGGCGAAGGAAGCGTACAGCTCCGGGCACTGCTCAATGTTTCCTTTTGTGTTCTctttttgttatatatgtttttaaaaaaaaatcatcataatcTAAGTACTTACCCTTAATGTGACTGTTCCAAAGGAGCAGTTCATCTTTCTAAATATTTGTACTTTTCCACAAAAGAATGTGAGCGTACGTGAACGCCGTTATTCCGAACGCAGACCGATCGAATCTGATCAAATCGCTGAtaaatttggtttaaaaaaaaaattaaacaaatgttctTAGAGTTGTTGTGTTTTAGCGTGAATTAGTGAGTGAGTTTAGATagctgaaagttttttttatataaaggaatacattaatttatattctcccctatatatatatattatacatactgGGTTTTGtacttttcattcaattttgaggaaattaatttaataaaatgttttttttgttgtttttttttccccaccacagttcagaaaatgttaaaagagGTCCACCTCTTCAGggaaaacaaaatgtacatgCTGATTGATTTTTAATTCCCATCCACTCCTTTTAAATTTTGCGTGTTTATAAGTTTTGTGTAAGtatatattttatccatttttccCTCATAGCACATACTTCAATAGCTCTTTCCACAGAATCCATTCCACGGAAAAGACCGGTATGTCGTACATACTGCCAATACATCGTCTTGCAAATTGAGGCCTACCTTTAACTACGagactataaataaacaaactatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352289 lncRNA upstream 64 17789131 ~ 17804155 (+) False max
TU352290 lncRNA upstream 64 17789131 ~ 17804155 (+) False max
TU352267 lncRNA upstream 91121 17712804 ~ 17713098 (+) True G297492
TU352236 lncRNA upstream 114794 17677389 ~ 17689425 (+) True G297469
TU351953 lncRNA upstream 146170 17608598 ~ 17658049 (+) True G297223
TU352313 lncRNA downstream 17496 17824665 ~ 17825396 (+) True G297531
TU352296 lncRNA downstream 47555 17854724 ~ 17904733 (+) False sipa1l1
TU352297 lncRNA downstream 47555 17854724 ~ 17904733 (+) False sipa1l1
TU352298 lncRNA downstream 47555 17854724 ~ 17904733 (+) False sipa1l1
TU352340 lncRNA downstream 103820 17910989 ~ 17998231 (+) True G297558
XM_026923311.2 mRNA upstream 45531 17719542 ~ 17758688 (+) True susd6
XM_034313802.1 mRNA upstream 46320 17719542 ~ 17757899 (+) False susd6
XM_026922754.2 mRNA upstream 268862 17523660 ~ 17535357 (+) True zbtb2b
XM_034313740.1 mRNA upstream 324960 17252099 ~ 17479259 (+) True syne1a
XM_034313739.1 mRNA upstream 324960 17281625 ~ 17479259 (+) False syne1a
XM_026922990.2 mRNA downstream 19984 17827153 ~ 17842404 (+) True rab15
XM_034313640.1 mRNA downstream 47610 17854779 ~ 17942178 (+) True sipa1l1
XM_034313641.1 mRNA downstream 47610 17854779 ~ 17942178 (+) False sipa1l1
XM_034313642.1 mRNA downstream 47610 17854779 ~ 17942178 (+) False sipa1l1
XM_034313643.1 mRNA downstream 47610 17854779 ~ 17942178 (+) False sipa1l1
TU351537 other upstream 991426 16812117 ~ 16812793 (+) True G296863
TU351482 other upstream 1206432 16597150 ~ 16597787 (+) True G296825
TU351185 other upstream 1489093 16314263 ~ 16315126 (+) True G296562
TU351048 other upstream 1623987 16166398 ~ 16180232 (+) True G296430
trnav-cac_20 other upstream 2029105 15775042 ~ 15775114 (+) True trnav-cac_20
XR_004580105.1 other downstream 47610 17854779 ~ 17937614 (+) False sipa1l1
TU352440 other downstream 378940 18186109 ~ 18195131 (+) False ino80
TU352782 other downstream 688614 18495783 ~ 18504263 (+) False syndig1l
TU353310 other downstream 1482816 19289985 ~ 19290539 (+) True G298379
XR_004580076.1 other downstream 1522056 19329225 ~ 19329925 (+) True LOC117599671

Expression Profile