RNA id: XM_026923311.2


Basic Information

Item Value
RNA id XM_026923311.2
length 2168
RNA type mRNA
GC content 0.55
exon number 7
gene id susd6
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17719542 ~ 17758688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCATGGAGACGGGAGGAGGGGCTGAGAGCGGGGCAGTAGGCAGGCTACAGCGCTGCTAGTCGGCATTAGCGCTCGCGCAGCTGAGTGTTCCGGGCTGCGGCGATCTCTCGGATgattacaaaaagaaaacaggattaaaaccaaatctttcttcttcctccaacTCACTTTAACATTCCAGCTGATTTCATAAAGCTCCATGCCCCGGAAGTGAACTCTGAGAGGACGGCTTTCACTGACTGgttCAGCCGGAGCGGACTCTAGGCGTGCAGGTGCAGCAGGGCTGAAAGATGTGCGATGGGATGGCCACGCGTTCACACGCTCTGGTGATCGTGGCACTGCAgctgctcctcttcctcaccgCACTCCCCGCAGGCCAGGCCTCAGGTTGCTCCAGGCCCTCAGCAGTGCTGTATGGCCGAGGAAACCTCACAGAGACCAACCGCGGCTCCTTCTCCGTAGGCACAGTGCTGCAGTACAGCTGTGATTCAGGATACACACTGAGCGGCGAGAGCGTCATCACGTGCATCGCACCGGGTCACTGGTCCTCCGTCCCACCGCACTGCCTCAAAAACGACGtgtgtcgTCCCCCCAGTGAGCCGGAGAATGGGGGCTACATGTGCCACCCCTCACCCTGCCCCAGACTGACTGAAGGCACAGTGATCGAGTATTTCTGTGATGAAGGCTACACGCTGAAAGGATACAGGTACCACACATGCAGGAACGGAGACTGGGACTCAGCAGCGCCCATCATCTGTCACCTGGGACAAGGGAAGGAAGAGCGCTCTTCTCTGGGTATGCCAGCTCTTTCTATCATGGCCTCCACTGCCAGCTCTGTGGCCCTCATCCTGCTGCTGGTCGTCCTTTTCGTCCTGCTGCAGCCCAAACTCAAATCCTTCCATCACAGCAGACGTGAGCAGGGTGTATGTGGCCAGGCCGCCTCCATCGTCGTAGAGGGAGTTCAGGTGTCTCTTCCTTCCTACGAGGAGGCGGTTTACGGCAGCGGCGGCGCAGCGGCTCCTCCCCCAGAGTCCCGCGTAAACATCGTGCTCTCCGAGGGGCCGCAGACGGAGCCTCCCGCTTCAGAGCTCAGCCACTCCCGACCTGAGCACAGCCtcccctccacctccacctccacctccgcCTCCGCACGCTCCTGTCACTCCGAGACCGTGCTCGTTCACCAGgacccctcctcctcctcctctccgtcctcctcctcctcctcctcttccacctGGGTGTCGGAGCAGCACGGGGCGGCAGCGGCGGCAGCGCGTAGGCCGAGCAGCACGAGCAGCGACCAGCACAGCCTGCTCTCACTCACCTCCGTAGAGGAATATGGAGACGATATTCCTCTGCTGAAGGAGGCCTGAGAGCACACGCAGCGTCCTCCTGTCTGTGGATGATGACCAGGACTGTGGCTCCTTAAGCTTTTTACCAAACCCTTCCCCCATTGCTGCCGTACAGAATGCAGGAGTAACCAAATGCCTCTCGATTGACCGCCCCTTCAACTCTCTACCAACTCTCCGAGCTGCACCGTGTAATCGCTCATCCTCGCCTCACTGTAAAACACCGCCATCATGCTCCACACGCTCCCACCTTCTCCCTCAAACGACTGCACAGATGCTATAGAATATACAGGATTATGTATAACGCATACATACGGGCTGAATAACACGTTTATAAACGCCACCTTTTCCCCAGCGGCGCACTAACAAACAAGCAGTTGCACTCATAAAGCCTTCATCTTCACACAGCTTTCGCGAATTATGAATGCATTCAGTCAGTTTTGTGTAAACGATGAACCTTTGGTCGATCAGTGACTGTGACCTCTCACCCCTGAGGTTTACTAAATCAGGtcgttttttttctgttgttttttttgtttgtttgttttttttaaatgctgcatGATCTGTGcatctcaattttttttcccccccaaactAGTGCACACGAGAACACGCATGCTGCACAGGATGGACGAGCGAGATACAGGGATGAACTGGTTTACATAGTACTGTATTCAAAGACATGCTTGCCTTTCTGTTCGctgcaaactgtgtgtgtgtgagagagtgtgagtgtgtgtgtgtgtgtgttttggctttACACGTTTGACTGAATGAAGAGGGCTCAAATgtgtcacctttttttttttc

Function

GO: NA

KEGG:

id description
K23824 SUSD6; sushi domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352267 lncRNA upstream 6444 17712804 ~ 17713098 (+) True G297492
TU352236 lncRNA upstream 30117 17677389 ~ 17689425 (+) True G297469
TU351953 lncRNA upstream 61493 17608598 ~ 17658049 (+) True G297223
TU351902 lncRNA upstream 182743 17536485 ~ 17536799 (+) True G297176
TU351876 lncRNA upstream 205736 17510956 ~ 17513806 (+) True G297152
TU352289 lncRNA downstream 30443 17789131 ~ 17804155 (+) False max
TU352290 lncRNA downstream 30443 17789131 ~ 17804155 (+) False max
TU352293 lncRNA downstream 44257 17802945 ~ 17860689 (+) True G297515
TU352313 lncRNA downstream 65977 17824665 ~ 17825396 (+) True G297531
TU352296 lncRNA downstream 96036 17854724 ~ 17904733 (+) False sipa1l1
XM_026922754.2 mRNA upstream 184185 17523660 ~ 17535357 (+) True zbtb2b
XM_034313740.1 mRNA upstream 240283 17252099 ~ 17479259 (+) True syne1a
XM_034313739.1 mRNA upstream 240283 17281625 ~ 17479259 (+) False syne1a
XM_034313741.1 mRNA upstream 240283 17281626 ~ 17479259 (+) False syne1a
XM_026922842.2 mRNA upstream 504105 17196227 ~ 17215437 (+) True nrbp1
XM_034313917.1 mRNA downstream 30412 17789100 ~ 17807177 (+) True max
XM_026922990.2 mRNA downstream 68465 17827153 ~ 17842404 (+) True rab15
XM_034313640.1 mRNA downstream 96091 17854779 ~ 17942178 (+) True sipa1l1
XM_034313641.1 mRNA downstream 96091 17854779 ~ 17942178 (+) False sipa1l1
XM_034313642.1 mRNA downstream 96091 17854779 ~ 17942178 (+) False sipa1l1
TU351537 other upstream 906749 16812117 ~ 16812793 (+) True G296863
TU351482 other upstream 1121755 16597150 ~ 16597787 (+) True G296825
TU351185 other upstream 1404416 16314263 ~ 16315126 (+) True G296562
TU351048 other upstream 1539310 16166398 ~ 16180232 (+) True G296430
trnav-cac_20 other upstream 1944428 15775042 ~ 15775114 (+) True trnav-cac_20
TU352300 other downstream 45531 17804219 ~ 17807169 (+) False max
XR_004580105.1 other downstream 96091 17854779 ~ 17937614 (+) False sipa1l1
TU352440 other downstream 427421 18186109 ~ 18195131 (+) False ino80
TU352782 other downstream 737095 18495783 ~ 18504263 (+) False syndig1l
TU353310 other downstream 1531297 19289985 ~ 19290539 (+) True G298379

Expression Profile