G297152 (armt1)


Basic Information

Item Value
gene id G297152
gene name armt1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17510956 ~ 17513806 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351876
tgttaaacagCATGCTTTACTCCATTCTATCACTGCAACTCACCTCCAGTCCTTTTCCCAAGCAAATGTAGTTCCATTACATTCCTTTTAAACACAATTCATGCAAATACTTAAGACAATAGCAGTCCACTGTAAACACCGCCTTTCAATTAACATCCATCAAAAACAAGATTGTCACTAATGTAAAccatttgaccaaaaaaaaaacaagcttttgCATAATTAACATCCAGTATATAGCTTAGAAACATATCAGTCACATCCATTAGATTTCTATCTTTACTAtagatgattaaaaataaatctctcttGTTCGCAACGTATGAATATAGAGCATGCACTCTTTCACAAATTAGTTTCAGGCTAATATTACAAACATTCTGgcactttttttaatatgcatatTGACAGAGAAATAAACTTCTGCCAGGAAGGAACATTTtgcacaaaataatatttttgaagCTGCAAGACTACAGTTGTTGAGCAGTAGTAAGTCAACGTGACTGGACTCGTGGTGAAATCTTAAAGAAGAATGAAGAAATGGTGAAATGTCTTACAGAGGAACGGTGCATTCAAACCTGGAGTTATTTGTTTActtatcttttatttaatagaaaaaGTGTTGGTTACAGGGCCTCAtgcaacacacactgtaaccataacaaccttttccatttccatttaaatACGTCTTAAGAATATATCCAAGACATAATCAAAAGTTGTGTTAGTAAGCAATTTATGGACTGAATTTAACAAATGCCCCCTTAGATTTGTATTATAAAgttgcttttatattttttaacgGAAATAAATCGCTGTCCGGAACACCAACAACAACGCTCTACGGTGCAGATTTATGCACCGAATCGTTCgtaagaaatttggtattcattaaaatacaatGAATGCGgaaaaaacgttcgtatcctactcgtgctcctgagtgtgtttaaatttACGCagaagaagactaactaatgtaaacctcgattTGATCTACTTCAGATCATATAACCTGCATTACTGCATTTTTAgatctggaatatactgtggagtttaaactgattattgttattacgtttacagcgtttagcagacgccctaatccagagcgacttatagtGGAGTTTGGAgtttctatcaaaaacacatcctcatgctggTTCACTAGGTCGGGGACTAAGAGCTCCATCGGGAACGTTTAGTGAAAaccagctgttttattttattggctttaattaaacaaactaaaaatgaacaaagcgagccaacacaaacccataaattaagacagataaaacaaatcattcaaTTTTGACAAAAGACACGGCAGTGTATAAACAGAGAACGGACCGCTCTGTCTGAGCCGTAAGCTGATGGAGTATTTAGGGCTCGCTTATTATTATTGCtcattgttttatatatatatatatatatatatatcattgtTTTAGTTACACGGCAACACTGGATTAAGGGCAatcaaatattttcttaaatctCCTCACTTTTGCTCAATAACAAGActaattttttgtcttttttacagtcactttgtcctccatggtGGTTTCCCTGCAACTTGGACCCTGATTGGCTGGGAGGTAAAAAAGCGAAAATGTTATAACTCATGCTCTGctggttgaaaaaaaataattaagcagCCGAAAAACAATTTGTTATAGTCAGGTAAAGTTGTTTGCATTCACTTCTTAACAAACTGAATATCTAGAAGGTGTACGTGTGTTCCCTGGACAAATATTCTGGTTGTAAGAATGCATTTTCACATTCCTCTGTAAATGTAACAAAGATCTAAGTCCAGTTACATTGAGTCATTACTACTAGACATTTTTACCTACTTGGATATCTGAAAACTGTCATAGCCATCTGGTAAGACTCTGATattaaggattaaaaaaaaacattaaagagaAATTATTCTAGCTTGTAATTAATGACTACTATCCCatctcatttctcttttttggtATTGTTGTTCTCTTGGCATCTTTAAGaaccctgctgctgctgttctttGAGTGGACTGCAGAACTGAATCACTGCGTATTTGCCGCTGATCATCCACTCGGGGTCCTGAGAGGCGAGTTTCTCCGCCTGGCCTGGCTGTAACCCGACCTGCACGTTAGCCTTCAGAGTCCTGAGGCTGCACAGCGGAGCAGGCAGGAAGCCCCTGAGCGCTCGTTCGAACGGCACAGTGTGCTCCCACATTCTGTCTCCCGTCAGCCGGCGGTAGTTCAGGTCTCCTTTAAACAGGATCAGATCGGAACCCTGTAGAGTGGAGTAGAGATCTGCGGCTTCTGCTGGCATGTCGCAGAACTCGTGCGGTAAAGTCCAGAAGCGATGGTCGTGATACGACCAAGCTCCATCTTTAACGTGGCGCTTCCACTGGACGCCGCAGGACGACATGTGCTTGTGATTGGATGCTGTGGTTTGCGAAATGGTCCAATCGAAATCCTGCTTGTTGACATCAGAGACGTACCACGGGATGGACTTGCCATGGAAACGCACTTCCTTCGCCAAGCCGACGGAGACCATAAAATCTGCGAGTACCAGATCGGTGACTAGCTCAAAGCCAGCGTTGTCTAGAATGATGTCCACTCTAATGCCAGTCTTCTCCGATCCTCCAGAACCTTGTGCAGACGTTAAAATGGACCAAACCTTATCCGAATCATCCACTAGGATGAACTGCTGCAGATCAGCCAGACAATCCATCGGGTTGGACTTCTGAGAGTTTTCCTGGCCAGCTGAGATGGATAAATCACACCTGTTTCCCC

Function

symbol description
armt1 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity; phosphatase activity; and protein carboxyl O-methyltransferase activity. Predicted to be involved in methylation and regulation of response to DNA damage stimulus. Orthologous to human ARMT1 (acidic residue methyltransferase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351876 True 2801 lncRNA 0.40 2 17510956 17513806

Neighbor

gene id symbol gene type direction distance location
nrbp1 nrbp1,LOC107659221,LOC107665360,LOC107737320,LOC103372645 coding upstream 295519 17196227 ~ 17215437 (+)
znf106b NA coding upstream 346229 17155779 ~ 17164727 (+)
ttbk2b LOC108258239,LOC108424489 coding upstream 362952 17129944 ~ 17148004 (+)
slc35f6 slc35f6,LOC107721386,LOC107737338,LOC107665330 coding upstream 383027 17119934 ~ 17127929 (+)
zgc:153896 LOC108257993,LOC108424413 coding upstream 420671 17084931 ~ 17090285 (+)
zbtb2b zbtb2,LOC108424498 coding downstream 9854 17523660 ~ 17535357 (+)
susd6 susd6 coding downstream 205736 17719542 ~ 17758688 (+)
rab15 rab15,LOC107668202,LOC107671782,LOC106571087 coding downstream 313347 17827153 ~ 17842404 (+)
rgs6 rgs6,LOC108424512,LOC108257637,LOC107659172,LOC107602058,LOC107721319 coding downstream 443098 17956904 ~ 18067433 (+)
wdr21 dcaf4,LOC107602090,LOC107659175,LOC107562700 coding downstream 592870 18106676 ~ 18114936 (+)
G297123 NA non-coding upstream 248370 17240056 ~ 17262586 (+)
G297084 NA non-coding upstream 298711 17124961 ~ 17212245 (+)
G296940 NA non-coding upstream 428880 17081867 ~ 17082076 (+)
G296937 lap4a,laptm4a non-coding upstream 435904 17074143 ~ 17075052 (+)
G296936 NA non-coding upstream 437386 17071821 ~ 17073570 (+)
G297176 NA non-coding downstream 22679 17536485 ~ 17536799 (+)
G297223 NA non-coding downstream 94792 17608598 ~ 17658049 (+)
G297469 NA non-coding downstream 163583 17677389 ~ 17689425 (+)
G297488 NA non-coding downstream 194962 17708768 ~ 18146503 (+)
G297492 NA non-coding downstream 198998 17712804 ~ 17713098 (+)
syne1a LOC108257639 other upstream 31685 17252099 ~ 17479271 (+)
G296863 LOC108257755 other upstream 698163 16812117 ~ 16812793 (+)
afdna afdn other upstream 703665 16680096 ~ 16807291 (+)
LOC113531918 LOC108257642 other upstream 892518 16601704 ~ 16618438 (+)
G296825 NA other upstream 913169 16597150 ~ 16597787 (+)
max max,LOC107721316 other downstream 275294 17789100 ~ 17807177 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other downstream 340918 17854724 ~ 17942178 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other downstream 672221 18186027 ~ 18246057 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other downstream 981869 18495675 ~ 18528199 (+)
itpk1a itpk1,LOC108257830 other downstream 1582146 19095952 ~ 19137613 (+)

Expression


Co-expression Network