susd6 (susd6)


Basic Information

Item Value
gene id susd6
gene name susd6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17719542 ~ 17758688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923311.2
TTTCCATGGAGACGGGAGGAGGGGCTGAGAGCGGGGCAGTAGGCAGGCTACAGCGCTGCTAGTCGGCATTAGCGCTCGCGCAGCTGAGTGTTCCGGGCTGCGGCGATCTCTCGGATgattacaaaaagaaaacaggattaaaaccaaatctttcttcttcctccaacTCACTTTAACATTCCAGCTGATTTCATAAAGCTCCATGCCCCGGAAGTGAACTCTGAGAGGACGGCTTTCACTGACTGgttCAGCCGGAGCGGACTCTAGGCGTGCAGGTGCAGCAGGGCTGAAAGATGTGCGATGGGATGGCCACGCGTTCACACGCTCTGGTGATCGTGGCACTGCAgctgctcctcttcctcaccgCACTCCCCGCAGGCCAGGCCTCAGGTTGCTCCAGGCCCTCAGCAGTGCTGTATGGCCGAGGAAACCTCACAGAGACCAACCGCGGCTCCTTCTCCGTAGGCACAGTGCTGCAGTACAGCTGTGATTCAGGATACACACTGAGCGGCGAGAGCGTCATCACGTGCATCGCACCGGGTCACTGGTCCTCCGTCCCACCGCACTGCCTCAAAAACGACGtgtgtcgTCCCCCCAGTGAGCCGGAGAATGGGGGCTACATGTGCCACCCCTCACCCTGCCCCAGACTGACTGAAGGCACAGTGATCGAGTATTTCTGTGATGAAGGCTACACGCTGAAAGGATACAGGTACCACACATGCAGGAACGGAGACTGGGACTCAGCAGCGCCCATCATCTGTCACCTGGGACAAGGGAAGGAAGAGCGCTCTTCTCTGGGTATGCCAGCTCTTTCTATCATGGCCTCCACTGCCAGCTCTGTGGCCCTCATCCTGCTGCTGGTCGTCCTTTTCGTCCTGCTGCAGCCCAAACTCAAATCCTTCCATCACAGCAGACGTGAGCAGGGTGTATGTGGCCAGGCCGCCTCCATCGTCGTAGAGGGAGTTCAGGTGTCTCTTCCTTCCTACGAGGAGGCGGTTTACGGCAGCGGCGGCGCAGCGGCTCCTCCCCCAGAGTCCCGCGTAAACATCGTGCTCTCCGAGGGGCCGCAGACGGAGCCTCCCGCTTCAGAGCTCAGCCACTCCCGACCTGAGCACAGCCtcccctccacctccacctccacctccgcCTCCGCACGCTCCTGTCACTCCGAGACCGTGCTCGTTCACCAGgacccctcctcctcctcctctccgtcctcctcctcctcctcctcttccacctGGGTGTCGGAGCAGCACGGGGCGGCAGCGGCGGCAGCGCGTAGGCCGAGCAGCACGAGCAGCGACCAGCACAGCCTGCTCTCACTCACCTCCGTAGAGGAATATGGAGACGATATTCCTCTGCTGAAGGAGGCCTGAGAGCACACGCAGCGTCCTCCTGTCTGTGGATGATGACCAGGACTGTGGCTCCTTAAGCTTTTTACCAAACCCTTCCCCCATTGCTGCCGTACAGAATGCAGGAGTAACCAAATGCCTCTCGATTGACCGCCCCTTCAACTCTCTACCAACTCTCCGAGCTGCACCGTGTAATCGCTCATCCTCGCCTCACTGTAAAACACCGCCATCATGCTCCACACGCTCCCACCTTCTCCCTCAAACGACTGCACAGATGCTATAGAATATACAGGATTATGTATAACGCATACATACGGGCTGAATAACACGTTTATAAACGCCACCTTTTCCCCAGCGGCGCACTAACAAACAAGCAGTTGCACTCATAAAGCCTTCATCTTCACACAGCTTTCGCGAATTATGAATGCATTCAGTCAGTTTTGTGTAAACGATGAACCTTTGGTCGATCAGTGACTGTGACCTCTCACCCCTGAGGTTTACTAAATCAGGtcgttttttttctgttgttttttttgtttgtttgttttttttaaatgctgcatGATCTGTGcatctcaattttttttcccccccaaactAGTGCACACGAGAACACGCATGCTGCACAGGATGGACGAGCGAGATACAGGGATGAACTGGTTTACATAGTACTGTATTCAAAGACATGCTTGCCTTTCTGTTCGctgcaaactgtgtgtgtgtgagagagtgtgagtgtgtgtgtgtgtgtgttttggctttACACGTTTGACTGAATGAAGAGGGCTCAAATgtgtcacctttttttttttc
>XM_034313802.1
TTTCCATGGAGACGGGAGGAGGGGCTGAGAGCGGGGCAGTAGGCAGGCTACAGCGCTGCTAGTCGGCATTAGCGCTCGCGCAGCTGAGTGTTCCGGGCTGCGGCGATCTCTCGGATgattacaaaaagaaaacaggattaaaaccaaatctttcttcttcctccaacTCACTTTAACATTCCAGCTGATTTCATAAAGCTCCATGCCCCGGAAGTGAACTCTGAGAGGACGGCTTTCACTGACTGAGTGTGAGCGGATAGAGCGCGCCTGCCAACTCAACACATCAGCGACGAAGCGCGAggaaatcatcatcatctcccCGTCTTAAAATGCGCGTTTTATCGAAGGTTAACATGAATGGACATAAGACAgttCAGCCGGAGCGGACTCTAGGCGTGCAGGTGCAGCAGGGCTGAAAGATGTGCGATGGGATGGCCACGCGTTCACACGCTCTGGTGATCGTGGCACTGCAgctgctcctcttcctcaccgCACTCCCCGCAGGCCAGGCCTCAGGTTGCTCCAGGCCCTCAGCAGTGCTGTATGGCCGAGGAAACCTCACAGAGACCAACCGCGGCTCCTTCTCCGTAGGCACAGTGCTGCAGTACAGCTGTGATTCAGGATACACACTGAGCGGCGAGAGCGTCATCACGTGCATCGCACCGGGTCACTGGTCCTCCGTCCCACCGCACTGCCTCAAAAACGACGtgtgtcgTCCCCCCAGTGAGCCGGAGAATGGGGGCTACATGTGCCACCCCTCACCCTGCCCCAGACTGACTGAAGGCACAGTGATCGAGTATTTCTGTGATGAAGGCTACACGCTGAAAGGATACAGGTACCACACATGCAGGAACGGAGACTGGGACTCAGCAGCGCCCATCATCTGTCACCTGGGACAAGGGAAGGAAGAGCGCTCTTCTCTGGGTATGCCAGCTCTTTCTATCATGGCCTCCACTGCCAGCTCTGTGGCCCTCATCCTGCTGCTGGTCGTCCTTTTCGTCCTGCTGCAGCCCAAACTCAAATCCTTCCATCACAGCAGACGTGAGCAGGGTGTATGTGGCCAGGCCGCCTCCATCGTCGTAGAGGGAGTTCAGGTGTCTCTTCCTTCCTACGAGGAGGCGGTTTACGGCAGCGGCGGCGCAGCGGCTCCTCCCCCAGAGTCCCGCGTAAACATCGTGCTCTCCGAGGGGCCGCAGACGGAGCCTCCCGCTTCAGAGCTCAGCCACTCCCGACCTGAGCACAGCCtcccctccacctccacctccacctccgcCTCCGCACGCTCCTGTCACTCCGAGACCGTGCTCGTTCACCAGgacccctcctcctcctcctctccgtcctcctcctcctcctcctcttccacctGGGTGTCGGAGCAGCACGGGGCGGCAGCGGCGGCAGCGCGTAGGCCGAGCAGCACGAGCAGCGACCAGCACAGCCTGCTCTCACTCACCTCCGTAGAGGAATATGGAGACGATATTCCTCTGCTGAAGGAGGCCTGA

Function

symbol description
susd6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SUSD6 (sushi domain containing 6).

NR:

description
sushi domain-containing protein 6-like

GO: NA

KEGG:

id description
K23824 SUSD6; sushi domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923311.2 True 2168 mRNA 0.55 7 17719542 17758688
XM_034313802.1 False 1505 mRNA 0.59 8 17719542 17757899

Neighbor

gene id symbol gene type direction distance location
zbtb2b zbtb2,LOC108424498 coding upstream 184185 17523660 ~ 17535357 (+)
nrbp1 nrbp1,LOC107659221,LOC107665360,LOC107737320,LOC103372645 coding upstream 504105 17196227 ~ 17215437 (+)
znf106b NA coding upstream 554815 17155779 ~ 17164727 (+)
ttbk2b LOC108258239,LOC108424489 coding upstream 571538 17129944 ~ 17148004 (+)
slc35f6 slc35f6,LOC107721386,LOC107737338,LOC107665330 coding upstream 591613 17119934 ~ 17127929 (+)
rab15 rab15,LOC107668202,LOC107671782,LOC106571087 coding downstream 68465 17827153 ~ 17842404 (+)
rgs6 rgs6,LOC108424512,LOC108257637,LOC107659172,LOC107602058,LOC107721319 coding downstream 198216 17956904 ~ 18067433 (+)
wdr21 dcaf4,LOC107602090,LOC107659175,LOC107562700 coding downstream 347988 18106676 ~ 18114936 (+)
pigh pigh coding downstream 372184 18130872 ~ 18140151 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107668247,LOC107659178 coding downstream 411915 18170603 ~ 18184297 (+)
G297492 NA non-coding upstream 6444 17712804 ~ 17713098 (+)
G297469 NA non-coding upstream 30117 17677389 ~ 17689425 (+)
G297223 NA non-coding upstream 61493 17608598 ~ 17658049 (+)
G297176 NA non-coding upstream 182743 17536485 ~ 17536799 (+)
G297152 armt1 non-coding upstream 205736 17510956 ~ 17513806 (+)
G297515 NA non-coding downstream 44257 17802945 ~ 17860689 (+)
G297531 NA non-coding downstream 65977 17824665 ~ 17825396 (+)
G297558 NA non-coding downstream 152301 17910989 ~ 17998231 (+)
G297631 NA non-coding downstream 427616 18186304 ~ 18187136 (+)
G297632 chac1 non-coding downstream 491594 18250282 ~ 18252424 (+)
syne1a LOC108257639 other upstream 240271 17252099 ~ 17479271 (+)
G296863 LOC108257755 other upstream 906749 16812117 ~ 16812793 (+)
afdna afdn other upstream 912251 16680096 ~ 16807291 (+)
LOC113531918 LOC108257642 other upstream 1101104 16601704 ~ 16618438 (+)
G296825 NA other upstream 1121755 16597150 ~ 16597787 (+)
max max,LOC107721316 other downstream 30412 17789100 ~ 17807177 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other downstream 96036 17854724 ~ 17942178 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other downstream 427339 18186027 ~ 18246057 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other downstream 736987 18495675 ~ 18528199 (+)
itpk1a itpk1,LOC108257830 other downstream 1337264 19095952 ~ 19137613 (+)

Expression


Co-expression Network