G296863 (LOC108257755)


Basic Information

Item Value
gene id G296863
gene name LOC108257755
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16812117 ~ 16812793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351537
TCCTGTGTTGGCGTGTTCAGTGACAGAGATAAAGGTCTGAATTTGACTCAGACTGGGTGGAGTGAAGTCCACCATGGCGATGTGGTGCAGTGTGAGATCCGGAAAGCTCTCGTAAGCCGGCGGTTTggattcacacaaacacaccaggtGTTTAATCCCATTATCCAGTAAGAAGCGGTAATGAGCTGGACTGGAGGGCCAGGCCAGTCCTGCCACCTTATTCACCTCCACCCAGGAGAAGTTTGGTGGGGTGCAGGAAGtgtcctccatctctctctctctctcttttctcttccttgtttctctctcacttctgtctctgtctctcttccttctctgtgtgtgtatctctgtctctcttccttgtttctctctctctctgtcacttctctctcttctttgtgtttctctctctctctctctctctctctctcactttctctgtgtgtgtctgtctctcttgtttctctctctctctctctctctctctctcactttctctgtgtgtgtctgtctctcttgttcctctctctctctctctctctcagagaacAAAGGGCAGGCCTTTAATTCCGTACAGCGACCAGTTAAACGCGAGCACTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351537 True 605 TUCP 0.49 2 16812117 16812793

Neighbor

gene id symbol gene type direction distance location
LOC113532379 NA coding upstream 238562 16571750 ~ 16573555 (+)
slc22a2 slc22a2 coding upstream 243107 16559538 ~ 16569010 (+)
igf2r igf2r coding upstream 254011 16508562 ~ 16558106 (+)
tdrd15 tdrd15 coding upstream 305796 16491453 ~ 16506321 (+)
gopc gopc,LOC107727658,LOC107743304,LOC107697149 coding upstream 460061 16338194 ~ 16352056 (+)
snx9b snx9,snx9b,LOC108424479,LOC103024560,LOC107678839 coding downstream 27743 16840536 ~ 16881841 (+)
pomcb NA coding downstream 84744 16897537 ~ 16912713 (+)
si:dkey-206f10.1 LOC108257757,LOC108424481 coding downstream 155785 16968578 ~ 16981887 (+)
parp1 parp1,LOC107697162,LOC107678834 coding downstream 171900 16984693 ~ 17007941 (+)
lin9 lin9,LOC107678835,LOC107726751,LOC107697095 coding downstream 195402 17008195 ~ 17022604 (+)
G296864 NA non-coding upstream 1275 16727285 ~ 16810842 (+)
G296866 NA non-coding upstream 30333 16771931 ~ 16781784 (+)
G296861 NA non-coding upstream 52467 16670751 ~ 16759650 (+)
G296859 NA non-coding upstream 118534 16664218 ~ 16693583 (+)
G296868 NA non-coding upstream 122859 16687202 ~ 16689258 (+)
G296936 NA non-coding downstream 259028 17071821 ~ 17073570 (+)
G296937 lap4a,laptm4a non-coding downstream 261350 17074143 ~ 17075052 (+)
G296940 NA non-coding downstream 269074 17081867 ~ 17082076 (+)
G297084 NA non-coding downstream 312168 17124961 ~ 17212245 (+)
G297123 NA non-coding downstream 427263 17240056 ~ 17262586 (+)
afdna afdn other upstream 4826 16680096 ~ 16807291 (+)
LOC113531918 LOC108257642 other upstream 193679 16601704 ~ 16618438 (+)
G296825 NA other upstream 214330 16597150 ~ 16597787 (+)
G296562 NA other upstream 496991 16314263 ~ 16315126 (+)
G296430 LOC108257881,LOC107603058 other upstream 631885 16166398 ~ 16180232 (+)
syne1a LOC108257639 other downstream 439306 17252099 ~ 17479271 (+)
max max,LOC107721316 other downstream 976307 17789100 ~ 17807177 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other downstream 1041931 17854724 ~ 17942178 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other downstream 1373234 18186027 ~ 18246057 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other downstream 1682882 18495675 ~ 18528199 (+)

Expression


Co-expression Network