snx9b (snx9,snx9b,LOC108424479,LOC103024560,LOC107678839)


Basic Information

Item Value
gene id snx9b
gene name snx9,snx9b,LOC108424479,LOC103024560,LOC107678839
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16840536 ~ 16881841 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922829.2
GcgggtgagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagacacagacgaCCGACGCGCTGAGCTGAGCTGCTCAATCCGGACATTATTTCAGTAATTTGGCGGTGTGTTTcttgctgaagtgtgtgtgtgagcgggaTCAGTGCAGTGTAGAGTTCAGTGTAGAGTTCAGTGTAGAGATGTGTTAAAATTAGCCTCTGTGCTGCACGAGCGTGTTGTTTAGGAGTTGAGTTGTGAGGCGGAGGCAGGAATGTCTGCGTGAACAAACTCTCCAACAACAGGACACAACTTCTCTGATGACCGCGTTCCTGCCAGCGTGATGGCAACCAAGGCGCAGGTTTTATACGACTTCATAGCAGAGCCAGGCAACAACGAGCTTTCGGTGAGAGAGGGTGAGACGATCACAATCACCAACCAGagCATAGGCGGAGGATGGATCGAAGCGCGGAACAGCAGGGGAGAGGTCGGCCTGGTGCCTGAGGACTATGTGGAGGTCAGTAAGCCTCAGGCTTTTGCAGCAGGAGGAACTGCACCCCAGCTTGACCTGTCCTTCTTTGACAGTCATGCTACAGCAAGTACCACACAAGGCCAGGTGGATGTAGCTCAGCCGGAAACCCCACTCACCCCCATGACCCCCATCACCCCCGTGCTCCCGGCCCTGTCCTCCCCTCCTGAGaCGAGTAATGGCAGTGACCCGTGGGCCGTGTTCGACACTAATGCCTCTGGGGGTTTCTCCAATAACTGGGCTGCGCAGCCTGAAGGCACAGAGACGGGGCAGAGCGGCAGCAACGCATGGGGATCTGGTGGACACGGCCACCCTCACGCCTACCCCGGCCCAGGTGCCGAGGATGACGAGTGGGACGACGACTGGGACGACAGGAAGTCCTCGGGCGGGTTTGGTGAAAGTGAAACAGGCGAAAGCGGCGCCATCACCAGAGGAGGAGCTCATGGATCCTCCATGAAAATCACCCTCAACAAATTCCCGGGATTCTCCAAATCAGGCCCTGAGCTGTACCTCCTGTCCAAACAGGCCTCCAAAGGACCCAAGCTGTCTGTCTACAGTGGTGAGGTCGGCCCAGTGTGGGAGTACACTGAGCCTCAGCTGGACTGCGTTGTAGCAGACCCCAAAAAGGGCTCCAAAATGTACGGCCTCAAGAGCTACATCGAGTACCAGGTCACCCCTAACACAACCAACAAACCTGTCAATCATCGATACAAGCACTTTGATTGGCTGTATGAGAGACTTTTGGAGAAGTTTGGGTCAGCCATCCCCATCCCATCCCTGCCTGACAAGCAGGTCACAGGACGCTTTGAGGAAGAGTTCATTAAGATGCGTATGGAGAGACTTCAGGCCTGGATGTCCAGAATGTGCCGGCATCCCGTCGTCTCCAACAGCGAGGTCTTCCAGCTCTTCCTCACCTACAAGGATGAGAAGGACTGGAAAACGGggaagagaaaagcagagaaggATGAGACGGTCGGGGTGATGATCTTCTCCACGATAGAGCCTGAGGGACTGCCAGACCTGGACGTCCTCGAAGTcgAGCAGAAGTGTGAGCAGTTCAGTCGTTTCACCAAGGCGATGGATGATGGCGTGAAGGACCTGCTGACTGTCGGACATGAGCACTGGAAGCGCTGTACAGGCCCTCTGCCGAAAGAGTACCAGCGGATTGGTAAAGCCTTCCAGAACCTGTCGTCCGTCTTCACCAGCAGTGGATATGAAGGAGAAGCTACGCTCACTGACGCTCTCACAGCAGCAGGGAAGACCTACGAGGAGATCGCTCAGATGGTGGCCGAGCAGCCTAAAAAAGATCTTCACTTCCTCATGGAGACCAACAACGAGTACAAAGGGCTTCTGGGATGCTTTCCTGACACCATCGGAGTTCACAAGGCCGCCATAGAGAAAGTAAAAGAAGCAGACAAACTGGTGGCCACCAGTAAAATCACCTCTGGAGAGAAAGTCACTATGGGCAAGCGAGTCAGCACCATGTCTTATGCATTACAAGCGGAGATGAACCATTTCCATAGTAACCGCATCTACGACTACAACCGAGTGATGCAGCAGTACCTGGAGCAGCAAGTCAAATTTTACGAGACGATTGCGGAGAAGCTGAGACACGCTCACAGTCAGTTCACTACCATGTAAAGAAGAGGACTGCACTGAATCTCACACACAGGGCTCTCTTCCGCTCTCTATTTTtcttactcactctctctctttttctttgtctctgttcctctttaatatctgtatttgtctATGACCTCAGTGCCATAAAAAGATTTTGTTGATCTCAGACCAAAGGAGGTTTGCTAAAATATCACATCCTCTCTATCTACATGAAACATCTGCCTGTAATGTTCTGTTTTTAAGCCAAGGTCTTCATCCCAAACGGAGCGAGGATGTAAGAGGTAGCACAGACACCAGGTACTCTCAGTACTCTTTAACACCATCACTCGCTGTGTGTTTCCTTAATGCTAATTCCGTCCAGTGTTTTCTCTCCAGTCCACTGAGGAGATTATTATGGATATGATATTTGTGCCACTAGGAGGATCAGTCTGAATTTTTATGCTTTGAAATTGtgtataaagttttaaaatttagataataaataaaattaagttgAATTTGCATGTAAATGTGATCTCATTTAATTCTAAAATAATCAGATTCAGCAAAATTCCTGCTCAGATTTTGGTGCcacaaatcattttatatttactttatgaAAGTcgtttcagccaatcagcagtcAGGAAATGATTGTGTGCCTCATGATGAACATGAATCGGAAACTGAATCTGGACTGGATCTGCGCTGCCAAAGTACGAACGTGAAATTTaggtaacactttattatttctgcttttgtgtattatttatacACTGGGCATTCATAGCACATTCATAAGTATCATAGAAATTATGAAAGTCTTCGCTCAAAAACCGATGAGGTGACATCACAACATCATCTGTATCATTATAAGcagacagttgaagatttgtTTCTGTGAATTTTAtagcttttgttgttttttcccctctaacagcacattcatgaAGTGTTCAGATATCAGCTATAAAATCCAGTATTTGGGCTTTTTAATTAAGTGAAGTCGTAGAAGGTAAACGTGGGTGCAGTagatactgttaccaccatgaagttgattattttccaataacagcacatcctgaagtgttgtattcctctaaCGAAACATCAATTTGCCAACTCgagcaatttttatttattacattatagtgattatagttacatttactgtccatgaaacaagtcacTGAGGTTGTAacggctataaacagtcgtcccTTTACTTTAATTAGACAAAATCTTGCAGTTCTTACCGagaaattcctctgtcctgaagtatTGACTGCAGCAAAAAACTTTACAaccagctttaccactgactgttacaaagcactgacactggagactccttccataaatgttaaataaacatctcagaatCGACAAAGTCGACAACGCTGTAATAGAGTGtataaacagaaatgaagaaCTTGCTATAGATGATGAAAATTACAGTATGTTTgacccataataataataataataataataataataataataataataatcactatGTAAAATCATACTGTGTAAAAATCTTTACATATGTGTTGCTTTAGATAAGATTTCTGCAATGCTTAGGAGTGTTTTATGAAGGCCCAATGTAGAAAATAAAGTGTGACCAAATGAGTCACATCAGAATTTGTTAACATTGAATTTTGTATTGAATTGTGTTTTAAAACTTTACCtacaaattcctttttttttttttttttttacaatatcaaaataaatattccaGTGGCAcaaatgtcatgtcatgtccTATGGGACTGTGATTcaatatgaaagaaaagaatCGTCTATTAAGAATGACGAGGTGAACGAGTGTCTTACACCCTTTTTTCCtacagtgtctttttttttttggttggtttaTTTTGGAGTCGCAGAGGTTTGGCCTCTTCACTGTGCCTTTATGTGCTGAGGAACTTCAGCATGCGTCATATGCTATGCACTTTCCATTTACAGTGCCAAAATACAACAAGCAATGTGTATAACCTGTctataatctcacacacacacacacacacatacacacacacacacacctgatcacAAGTCTGGTTTTCAAGCATCTAAAGGAGGGCTGGTCCTTTTTGcacatgtatttttaatctgatatcatacaaatgcttttttttcctccaaagaaAGCCACATTTCCATCTCTGTgcaatcttttctttttctcgagcacttcttttcctcctcacacgatcgtgtgtgtgtgtgtatgtatatatatatatatatatatatatatatatatatatatacacaaacatacacacgtTAACAGATGCATGTGCTTCAGTTCATGATGTATCATTTTATGTATAGCGATGTCTGCAATGTTATTTGCACCAtgaatgatattaaaaaaaaagccacaagtGTAATTCTGATATGATTTAATAAACTTTGATTTG
>XM_026922830.2
cgggtgagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagacacagacgaCCGACGCGCTGAGCTGAGCTGCTCAATCCGGACATTATTTCAGTAATTTGGCGGTGTGTTTcttgctgaagtgtgtgtgtgagcgggaTCAGTGCAGTGTAGAGTTCAGTGTAGAGTTCAGTGTAGAGATGTGTTAAAATTAGCCTCTGTGCTGCACGAGCGTGTTGTTTAGGAGTTGAGTTGTGAGGCGGAGGCAGGAATGTCTGCGTGAACAAACTCTCCAACAACAGGACACAACTTCTCTGATGACCGCGTTCCTGCCAGCGTGATGGCAACCAAGGCGCAGGTTTTATACGACTTCATAGCAGAGCCAGGCAACAACGAGCTTTCGGTGAGAGAGGGTGAGACGATCACAATCACCAACCAGagCATAGGCGGAGGATGGATCGAAGCGCGGAACAGCAGGGGAGAGGTCGGCCTGGTGCCTGAGGACTATGTGGAGGTCAGTAAGCCTCAGGCTTTTGCAGCAGGAGGAACTGCACCCCAGCTTGACCTGTCCTTCTTTGACAGTCATGCTACAGCAAGTACCACACAAGGCCAGaCGAGTAATGGCAGTGACCCGTGGGCCGTGTTCGACACTAATGCCTCTGGGGGTTTCTCCAATAACTGGGCTGCGCAGCCTGAAGGCACAGAGACGGGGCAGAGCGGCAGCAACGCATGGGGATCTGGTGGACACGGCCACCCTCACGCCTACCCCGGCCCAGGTGCCGAGGATGACGAGTGGGACGACGACTGGGACGACAGGAAGTCCTCGGGCGGGTTTGGTGAAAGTGAAACAGGCGAAAGCGGCGCCATCACCAGAGGAGGAGCTCATGGATCCTCCATGAAAATCACCCTCAACAAATTCCCGGGATTCTCCAAATCAGGCCCTGAGCTGTACCTCCTGTCCAAACAGGCCTCCAAAGGACCCAAGCTGTCTGTCTACAGTGGTGAGGTCGGCCCAGTGTGGGAGTACACTGAGCCTCAGCTGGACTGCGTTGTAGCAGACCCCAAAAAGGGCTCCAAAATGTACGGCCTCAAGAGCTACATCGAGTACCAGGTCACCCCTAACACAACCAACAAACCTGTCAATCATCGATACAAGCACTTTGATTGGCTGTATGAGAGACTTTTGGAGAAGTTTGGGTCAGCCATCCCCATCCCATCCCTGCCTGACAAGCAGGTCACAGGACGCTTTGAGGAAGAGTTCATTAAGATGCGTATGGAGAGACTTCAGGCCTGGATGTCCAGAATGTGCCGGCATCCCGTCGTCTCCAACAGCGAGGTCTTCCAGCTCTTCCTCACCTACAAGGATGAGAAGGACTGGAAAACGGggaagagaaaagcagagaaggATGAGACGGTCGGGGTGATGATCTTCTCCACGATAGAGCCTGAGGGACTGCCAGACCTGGACGTCCTCGAAGTcgAGCAGAAGTGTGAGCAGTTCAGTCGTTTCACCAAGGCGATGGATGATGGCGTGAAGGACCTGCTGACTGTCGGACATGAGCACTGGAAGCGCTGTACAGGCCCTCTGCCGAAAGAGTACCAGCGGATTGGTAAAGCCTTCCAGAACCTGTCGTCCGTCTTCACCAGCAGTGGATATGAAGGAGAAGCTACGCTCACTGACGCTCTCACAGCAGCAGGGAAGACCTACGAGGAGATCGCTCAGATGGTGGCCGAGCAGCCTAAAAAAGATCTTCACTTCCTCATGGAGACCAACAACGAGTACAAAGGGCTTCTGGGATGCTTTCCTGACACCATCGGAGTTCACAAGGCCGCCATAGAGAAAGTAAAAGAAGCAGACAAACTGGTGGCCACCAGTAAAATCACCTCTGGAGAGAAAGTCACTATGGGCAAGCGAGTCAGCACCATGTCTTATGCATTACAAGCGGAGATGAACCATTTCCATAGTAACCGCATCTACGACTACAACCGAGTGATGCAGCAGTACCTGGAGCAGCAAGTCAAATTTTACGAGACGATTGCGGAGAAGCTGAGACACGCTCACAGTCAGTTCACTACCATGTAAAGAAGAGGACTGCACTGAATCTCACACACAGGGCTCTCTTCCGCTCTCTATTTTtcttactcactctctctctttttctttgtctctgttcctctttaatatctgtatttgtctATGACCTCAGTGCCATAAAAAGATTTTGTTGATCTCAGACCAAAGGAGGTTTGCTAAAATATCACATCCTCTCTATCTACATGAAACATCTGCCTGTAATGTTCTGTTTTTAAGCCAAGGTCTTCATCCCAAACGGAGCGAGGATGTAAGAGGTAGCACAGACACCAGGTACTCTCAGTACTCTTTAACACCATCACTCGCTGTGTGTTTCCTTAATGCTAATTCCGTCCAGTGTTTTCTCTCCAGTCCACTGAGGAGATTATTATGGATATGATATTTGTGCCACTAGGAGGATCAGTCTGAATTTTTATGCTTTGAAATTGtgtataaagttttaaaatttagataataaataaaattaagttgAATTTGCATGTAAATGTGATCTCATTTAATTCTAAAATAATCAGATTCAGCAAAATTCCTGCTCAGATTTTGGTGCcacaaatcattttatatttactttatgaAAGTcgtttcagccaatcagcagtcAGGAAATGATTGTGTGCCTCATGATGAACATGAATCGGAAACTGAATCTGGACTGGATCTGCGCTGCCAAAGTACGAACGTGAAATTTaggtaacactttattatttctgcttttgtgtattatttatacACTGGGCATTCATAGCACATTCATAAGTATCATAGAAATTATGAAAGTCTTCGCTCAAAAACCGATGAGGTGACATCACAACATCATCTGTATCATTATAAGcagacagttgaagatttgtTTCTGTGAATTTTAtagcttttgttgttttttcccctctaacagcacattcatgaAGTGTTCAGATATCAGCTATAAAATCCAGTATTTGGGCTTTTTAATTAAGTGAAGTCGTAGAAGGTAAACGTGGGTGCAGTagatactgttaccaccatgaagttgattattttccaataacagcacatcctgaagtgttgtattcctctaaCGAAACATCAATTTGCCAACTCgagcaatttttatttattacattatagtgattatagttacatttactgtccatgaaacaagtcacTGAGGTTGTAacggctataaacagtcgtcccTTTACTTTAATTAGACAAAATCTTGCAGTTCTTACCGagaaattcctctgtcctgaagtatTGACTGCAGCAAAAAACTTTACAaccagctttaccactgactgttacaaagcactgacactggagactccttccataaatgttaaataaacatctcagaatCGACAAAGTCGACAACGCTGTAATAGAGTGtataaacagaaatgaagaaCTTGCTATAGATGATGAAAATTACAGTATGTTTgacccataataataataataataataataataataataataataataatcactatGTAAAATCATACTGTGTAAAAATCTTTACATATGTGTTGCTTTAGATAAGATTTCTGCAATGCTTAGGAGTGTTTTATGAAGGCCCAATGTAGAAAATAAAGTGTGACCAAATGAGTCACATCAGAATTTGTTAACATTGAATTTTGTATTGAATTGTGTTTTAAAACTTTACCtacaaattcctttttttttttttttttttacaatatcaaaataaatattccaGTGGCAcaaatgtcatgtcatgtccTATGGGACTGTGATTcaatatgaaagaaaagaatCGTCTATTAAGAATGACGAGGTGAACGAGTGTCTTACACCCTTTTTTCCtacagtgtctttttttttttggttggtttaTTTTGGAGTCGCAGAGGTTTGGCCTCTTCACTGTGCCTTTATGTGCTGAGGAACTTCAGCATGCGTCATATGCTATGCACTTTCCATTTACAGTGCCAAAATACAACAAGCAATGTGTATAACCTGTctataatctcacacacacacacacacacatacacacacacacacacctgatcacAAGTCTGGTTTTCAAGCATCTAAAGGAGGGCTGGTCCTTTTTGcacatgtatttttaatctgatatcatacaaatgcttttttttcctccaaagaaAGCCACATTTCCATCTCTGTgcaatcttttctttttctcgagcacttcttttcctcctcacacgatcgtgtgtgtgtgtgtatgtatatatatatatatatatatatatatatatatatatatacacaaacatacacacgtTAACAGATGCATGTGCTTCAGTTCATGATGTATCATTTTATGTATAGCGATGTCTGCAATGTTATTTGCACCAtgaatgatattaaaaaaaaagccacaagtGTAATTCTGATATGATTTAATAAACTTTGATTTG

Function

symbol description
snx9b Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis; intracellular protein transport; and mitotic cytokinesis. Predicted to be located in cytoplasmic vesicle membrane. Orthologous to human SNX9 (sorting nexin 9).
snx9 Enables several functions, including 1-phosphatidylinositol binding activity; Arp2/3 complex binding activity; and protein homodimerization activity. Involved in several processes, including cytoskeleton-dependent cytokinesis; plasma membrane tubulation; and positive regulation of cellular protein metabolic process. Located in several cellular components, including cytoplasmic vesicle membrane; cytosol; and trans-Golgi network. Is extrinsic component of cytoplasmic side of plasma membrane. Colocalizes with clathrin-coated vesicle.

NR:

description
PREDICTED: sorting nexin-9 isoform X1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922829.2 True 4574 mRNA 0.44 19 16840536 16881841
XM_026922830.2 False 4489 mRNA 0.43 18 16840537 16881841

Neighbor

gene id symbol gene type direction distance location
LOC113532379 NA coding upstream 266981 16571750 ~ 16573555 (+)
slc22a2 slc22a2 coding upstream 271526 16559538 ~ 16569010 (+)
igf2r igf2r coding upstream 282430 16508562 ~ 16558106 (+)
tdrd15 tdrd15 coding upstream 334215 16491453 ~ 16506321 (+)
gopc gopc,LOC107727658,LOC107743304,LOC107697149 coding upstream 488480 16338194 ~ 16352056 (+)
pomcb NA coding downstream 15696 16897537 ~ 16912713 (+)
si:dkey-206f10.1 LOC108257757,LOC108424481 coding downstream 86737 16968578 ~ 16981887 (+)
parp1 parp1,LOC107697162,LOC107678834 coding downstream 102852 16984693 ~ 17007941 (+)
lin9 lin9,LOC107678835,LOC107726751,LOC107697095 coding downstream 126354 17008195 ~ 17022604 (+)
matn3a matn3a,LOC108424436,LOC108257995,LOC106571183,LOC103362679 coding downstream 168581 17050422 ~ 17066430 (+)
G296864 NA non-coding upstream 29694 16727285 ~ 16810842 (+)
G296866 NA non-coding upstream 58752 16771931 ~ 16781784 (+)
G296861 NA non-coding upstream 80886 16670751 ~ 16759650 (+)
G296859 NA non-coding upstream 146953 16664218 ~ 16693583 (+)
G296868 NA non-coding upstream 151278 16687202 ~ 16689258 (+)
G296936 NA non-coding downstream 189980 17071821 ~ 17073570 (+)
G296937 lap4a,laptm4a non-coding downstream 192302 17074143 ~ 17075052 (+)
G296940 NA non-coding downstream 200026 17081867 ~ 17082076 (+)
G297084 NA non-coding downstream 243120 17124961 ~ 17212245 (+)
G297123 NA non-coding downstream 358215 17240056 ~ 17262586 (+)
G296863 LOC108257755 other upstream 27743 16812117 ~ 16812793 (+)
afdna afdn other upstream 33245 16680096 ~ 16807291 (+)
LOC113531918 LOC108257642 other upstream 222098 16601704 ~ 16618438 (+)
G296825 NA other upstream 242749 16597150 ~ 16597787 (+)
G296562 NA other upstream 525410 16314263 ~ 16315126 (+)
syne1a LOC108257639 other downstream 370258 17252099 ~ 17479271 (+)
max max,LOC107721316 other downstream 907259 17789100 ~ 17807177 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other downstream 972883 17854724 ~ 17942178 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other downstream 1304186 18186027 ~ 18246057 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other downstream 1613834 18495675 ~ 18528199 (+)

Expression


Co-expression Network