slc22a2 (slc22a2)


Basic Information

Item Value
gene id slc22a2
gene name slc22a2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16559538 ~ 16569010 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923620.2
TCAGCATGACTGGTTCGAGGGTCAACCTGCTTTCTCTGGACTCTGCACTTGGAAGTGTGTAAATACCCTGTTGCTGCTCAGACCCTGCACACTGAAGCCATCGAGCTGCCGCCGCCATGACCACCTTTGACGACATCCTGGAAGAAGCCGGCAAATTCGGCTGGTTCCAGAAGCGCATCTTCTCCATGATGTGTCTCGTCTCAGTGCCCTTTGCTGGAGTTTATGTGGGCATCGTGTTTCTGGGCTTCACCCCTGAGCACTGGTGCCGTAACCCCGGGGTGAAGCAGGGTCAGATGCATTGTGGCTGGAGCTTAGAGAAGGCACTCAGGCTCACAGTGCCTTTTCAGAACACGTCTGCTGGAGTAGTGCGCAGTCAGTGTGAGAGGTTTGACGTGGAGTGGAACATCACTGATCTCAGCTGCGATGACCCGGACAGTGAGATCGCTGAGGGAAGGAGTGCTGCGCTGCCCACAAGTGCCTGCAAGGATGGCTGGGACTATGATTACGAGGGAAGAGAGTCTTTCGTCACTGAGTTTAATATGGTGTGCGAGGATGCTTGGTTATTAGACATGTGCCAGGCATCGCTCTCTGTTGGCTTTTTAGTAGGCAGCATTGCCATCGGATACCTCGCCGACAGGTTTGGTCGAAAATCAACTTTCCTGATGTCCTGTGTTCTGAATACAGTTACAGGAATTCTAGTGGCAGTATCTCCTAATTACATCTCCCTGCTGGTGTTCAGAGCGCTGTATGGGTTTGGGTCTAAGGGCGGCTGGATGGTAGCATTTGTTCTGATTACAGAGCTGGTGGGCGTGGAGTACCGGAGGCCAGTAGCTGTGTTCATTCAGATGTTCTTCAGCATCGGTATCCTCATCCTGCCCCTCATGGCCTACCTCATCACTAACTGGCGCTGGCTGCAGGTGGCCATCACAGCTCCATACCTCTGCTTCCTGGCTTACTATTGGTTTATTCCTGAGTCACCGAGGTGGCTTATCTCCCAGAACAACTCCAGTAGAGCTGTGGAGATCACAAAGAAAATGGCCAAAGTGAACAAGAAGACGCTCTCCAAAAACATTGAGACACTTAAAGACGATAGCATAGACACTGCTGTTGCCTCGTTCATGGACTTGATCCGGACCCCCAAGATGAGAAGGAACACATTCATCCTCAGCTACAACTGGTTCACTAGTGCTGTGGTGTATCAGGGCCTGATCATGCGTCTGGGGATCCTGGGTGGAAATGTCTACATTGACTTCCTCATCTCAGGCATAGTGGAATTCCCCGCTGccatcctcatcctcttcaCAATTGACCGTATCGGTCGACGGCTGCCGTTTGCAGCAGCCAACATTGTCTCCGGAGCCGCCTGCCTTATAACGGCTTTCATTCCAGAGAGTCTGTTCTGGTTAAAAACAGCTGTGGCTTGCATTGGGAGACTGGGAATCACTATGGCTTTTGAAATGGTGGTGTTTGTAAACACTGAATTGTATCCGACCTTCATCAGGAACTTGGGTTTTTCCGTGTGCTCCACTTTATGTGATATCGGAGGGATTGTAGCCCCGTTCCTGCTTTACAGACTTGCAGTCATCTGGCTGGAGCTACCGCTTATCATTTTTGGAATCCTGGCAGTGGTTGCTGGTGGTTTGGTGCTGCTGCTTCCTGAGACCAAAGGCGCACCCCTTCCAGAGACCATCGATGACATTGAACACCCGCAcagAAATAAAGAGGACACGGTGAAAAGTCATCAGCTGGAGAATCTACTGAATCCAGATGTGACAAATAATAAAGAAACTACGACAGTCTGAGTGGAACATTAGCAAGTCTCCTTAAAAACttgaatttacacaaactcaggagcgaaTCTTAGGATACACTGTTTTTTCCGACTAACAGGAATTTCATGAACACCAggtttcttgtgtaaacactcctgcaagtgatttacaaataaattcattcacatCCAGTTTGACAACTGAAGCCCACTGTGTGCATCATTCTAATAACCGTGTTGCATGTTTAGTAGTATGTGAATTGTCCTTGTGAAAACAgatacataaaacatttaagcTATACATGTTggtgcatgtttttaaaattctagTATTGTGACACAAAATGTGAATTGAATGAAAATATTGGTGCTAATTTATGAATAATTGCTGAGTTTAGCCTCCAAAATATCTCCAGTCTCAATTTCTGTCAAGCAATATCTTTATTGAAGAAATGTTCTTTGCatttgtagttgttgttgtgtgaAATAAGCTTGAGTATTTGTTAGAGGTTAGAGGTTTAACCTAATGGGTATTGATTGTAAAGTCTGAAAACGCACAACATGTATTCAAAACTTTatatcagtaaaataaatagataatattCAGGAAACACTCA

Function

symbol description
slc22a2 Enables transmembrane transporter activity. Acts upstream of or within determination of heart left/right asymmetry. Is integral component of plasma membrane. Is expressed in several structures, including eye; heart; liver; pleuroperitoneal region; and skeletal muscle. Human ortholog(s) of this gene implicated in acute kidney failure. Orthologous to several human genes including SLC22A2 (solute carrier family 22 member 2).

NR:

description
solute carrier family 22 member 2-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
K08199 SLC22A2, OCT2; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923620.2 True 2388 mRNA 0.46 11 16559538 16569010

Neighbor

gene id symbol gene type direction distance location
igf2r igf2r coding upstream 1432 16508562 ~ 16558106 (+)
tdrd15 tdrd15 coding upstream 53217 16491453 ~ 16506321 (+)
gopc gopc,LOC107727658,LOC107743304,LOC107697149 coding upstream 207482 16338194 ~ 16352056 (+)
cep85l cep85l,LOC107678822 coding upstream 395396 16101885 ~ 16164142 (+)
mcm9 mcm9,LOC107549683 coding upstream 465445 16069704 ~ 16094093 (+)
LOC113532379 NA coding downstream 2740 16571750 ~ 16573555 (+)
snx9b snx9,snx9b,LOC108424479,LOC103024560,LOC107678839 coding downstream 271526 16840536 ~ 16881841 (+)
pomcb NA coding downstream 328527 16897537 ~ 16912713 (+)
si:dkey-206f10.1 LOC108257757,LOC108424481 coding downstream 399568 16968578 ~ 16981887 (+)
parp1 parp1,LOC107697162,LOC107678834 coding downstream 415683 16984693 ~ 17007941 (+)
G296594 NA non-coding upstream 137257 16420786 ~ 16422281 (+)
G296592 NA non-coding upstream 161070 16397981 ~ 16398468 (+)
G296568 NA non-coding upstream 237026 16321326 ~ 16322512 (+)
LOC117599799 NA non-coding upstream 253105 16299002 ~ 16306433 (+)
G296429 NA non-coding upstream 393694 16151610 ~ 16165844 (+)
G296806 NA non-coding downstream 6057 16575067 ~ 16579149 (+)
G296859 NA non-coding downstream 95208 16664218 ~ 16693583 (+)
G296861 NA non-coding downstream 101741 16670751 ~ 16759650 (+)
G296868 NA non-coding downstream 118192 16687202 ~ 16689258 (+)
G296864 NA non-coding downstream 158275 16727285 ~ 16810842 (+)
G296562 NA other upstream 244412 16314263 ~ 16315126 (+)
G296430 LOC108257881,LOC107603058 other upstream 379306 16166398 ~ 16180232 (+)
G296138 NA other upstream 1254138 15223646 ~ 15305400 (+)
trdn trdn,fbrsl1 other upstream 1369926 15123767 ~ 15189612 (+)
trnas-gcu_16 NA other upstream 2171981 14387476 ~ 14387557 (+)
G296825 NA other downstream 28140 16597150 ~ 16597787 (+)
LOC113531918 LOC108257642 other downstream 32694 16601704 ~ 16618438 (+)
afdna afdn other downstream 111086 16680096 ~ 16807291 (+)
G296863 LOC108257755 other downstream 243107 16812117 ~ 16812793 (+)
syne1a LOC108257639 other downstream 683089 17252099 ~ 17479271 (+)

Expression


Co-expression Network