trdn (trdn,fbrsl1)


Basic Information

Item Value
gene id trdn
gene name trdn,fbrsl1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15123767 ~ 15189612 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350684
TTAAAATCCATTAATGTAGTTGCAtaaatttcaaacaaacaaagcagacaatttttttttccaaaataataaactcactcataattacacaaacaaacaccacaCTGCATTTTCCTCCATGTCTATCTTTGACATGATCACTGTGGTGCCTTTGCTGTGTCCACTGCATTTATCAGTGCATGTCTTATGTGCATGTGATTTGCTTTCACCACATTAATGCGGTTACGTGCCTGCCCTGTTTCACTCTGCATGCTGTCTGCAGCTGTGTGTTGGTGTACGTGCTGCTGTGCCACTCCTCTGCTTTGTGTCTCGTCTGAACAGGACCTCAGGCGGCGCGCGCCAGGAAAGCCTTCAAGGAGGCAGGCGGCCTTAGAGGAGGTATTCAGCACATGAGCAGAGAACCTGTGAAGGCAGTGCACGAAGCCATGGACGAATCCACCAACTGGATGAATGCGATCTTGACCTTTATGACTAATTTGGTAACGccggaggaagaggaagaagaagCTTTTCCCATCAAAGAGGACATTTGAGACAGAAGGATGGGGCTCTGTACCTGGGAGTGTGAAACCTTATACTGTGCACAACGTTTGTTAtgaatctgaaaaatgaaaaataaaattgagc
>XM_026922916.2
TTTGGGCCCTCCCTCTGTGGCCTATGCTTTCTGAACAGCACCCAAGAACAATCTAAGGTGCAACATAGGGTTTGGAACTGATTTAGTGGCtaccatccattttttttttacccctttGGTGCATTCACAAGTGGATCTGGAGGGTCTAGGCCCAAAGaaggttttactttttttttttttcttaaattaaacgGATCACTCGACATGACAGGCTTCATCTTCTGAGGCCTTACAAGAGTTCTGGGTCCTGGCAGGAACGCCACTTTCTCATTGGGACACTAATAGAAGAGACGGTTCTCACTTTCCACTGGAAAACTACTTCTGATTAACTCTTAAGATTAGGATTTCACCATATCACGGCAGAGATGGAAGCACggacctccaccaccaccaccactgtcCTTGAGAGCAAAGGAGGTGAGTCGAGTGCTCCAGCTACAAGAGTGTCCAAACGCACCATGATGGATGATCTGTACACCACCTTCAGCTCCCCTGTGGCCTGGGTACTGGTCCTGGCCCTCATCATCACCTGGTCTGCAGTTGCCATCATTGTTTTTGACCTTGTAGACAGCAAGAGCCTGGAAGGACCTCAGGCGGCGCGCGCCAGGAAAGCCTTCAAGGAGGCAGGCGGCCTTAGAGGAGGTATTCAGCACATGAGCAGAGAACCTGTGAAGGCAGTGCACGAAGCCATGGACGAATCCACCAACTGGATGAATGCGATCTTGACCTTTATGACTAATTTGGTAACGccggaggaagaggaagaagaagTGGAATGGCAAGCAGTGAAGAAGAAAGGAGAATTCCTACcagcaagaaaaaaagTTGCAGCTCTGCAGGCGAAAGAAATCATTCAGAAGGAGGAAGACAAGAAGAAGCtgaaggaagaggaagaggaggatgaagaacaggaggaggaggaagaggaaattTCTGCagtggaggagatggaggagaaaacagaagaagatgaagatgaagaagaggaggaggaagaggaagcagaagatgtggaggaggaggaggaggaggaggaagcagaagatgatgatgatgatgaggaggaggaggaggaggagaagttagaggaggagaaagatgaAGAGGATGACGAAGAAGAGCAGGCTGATGCAAAGCCTGTCCGAGTTGAGGATGAGGATCAAGTCaaggcagaaaaagaaaaagagaaagaagagaaaaaagcaaaGCCTACCAAAAAGCCTGAGGTAGacacaaaagaaaagaagaagaagaaaaaagaagaagaaaaagaggtagatgaggaaggggaagaaaaggTGGAAGAAAAGGTAAAGCCTGAAGCAGGTGCAGAggggaaggaaaaagaaaaaaaggagaaagagaagaagaaaaagaaagaaaaagagtcagaggaggaggaggaaaagccTGAAGTAGTtgatgtgaagaagaaaaagaaagagggagcaGACaaaccaaaagagaaaaaaacagaggaagtTGCTGAGGAACAGAAAGCAGCAGCAGACCAAACAGAagcagagacagaaatagacgTTGATGAAGACGTTGATGAAGATGTTGGAGAGGAGGATAAGGACGCTGACGAGATCTCTGAAtttgaagaagagaaaaaagcagcAAAAGAACCTGCTGATGTGGCAACAAAACAAGAAGCAGCCGAACCTGCTGTTGAAGCTGAAGAAGATAAAGAGGCAGACAAAGAAGAGGAAGTtgtcactgatgatgtcactccTGCAGTTTCAGCTTCCTCTGAAGAACGCAAAGATGAtagtgatgaagaagaaaaagaagaagaagtaaaagaagaagaagaagcactTACAGCTCCAACAGCTGATGAAAAAgatgatgaatatgaaaaacCTGCTGAAGTCACTGAGGACAAAATAGCTGATGAAAAAGATGAGAAGGATGAGGAAGATCTCAAAGAAACAGCTAAAGTGGACACTGGAGAAGAGAGTGATGAtgaccaaaaagaaaaagatgaccAAATTGAAGACAAGGTGGAAGAAGATGCTCTGAAGGCTGAGCAGGAAACCAGAGATGATACAATAATCGTTGCTGCAGCAACAATAGAAACTGACACTGAAAAActagaggaagaggaagagaaggcaGTAAAGGAggctgaggtggaaaaaaaggaagaagtaAAAGCTGACGATAAGAAAACATCAAAACCAGTGACTGAAGaCAAACTCAAAACAGAGGcaagagaggagaaagaagaagaaaccaaaaaactgaaaacagcagcagctgagAAAGAAGataaacaaaaagaatctaccacctgtgtgtgtatgcagccGGAACAACCCATACTGCCTCAAATACAAGATACTAAGCCCGAGGAGGAAAAAGaagaagaagagaaaaaggacCCACAAGAAAAACCTGAGCAAGCTGTGAAGCAGATGGTGGATTCTGAGTTCCCGCagaaaaaagAAGGCGTTGATGTCGTGGCCCCACTGCAGGACCTCCCAGCATGCCGCCCTACGCCGGTGTACTGCCCGGCTCCGCCCGGCTGGTACGTGCATCACATAGTCACAGATAGTCCATTACCACCGACGCCTGTGCGAGaggCTCAATTTGCTGCAATAGCAACTCATGCAGTCACGCTTCAAAGACAAGATGCTGACCAAGACAAACCGAAGCAAGTGACAAAAAAGAAAGAGCCTCCCGTTAAGAAGCGAAAAGTAACAATTACTAAGAAAGCTACAGTCTCAAAAGGACTGAAAGTAAAGGCACCTGAGGAGAAAGTAACTCAGAAAAGGAAAGGTCGGGTGACTCCTAAAGAGAAGCTCAGATTGATCCCCCACAGGCGAGAAGTACCAAAGCTGACCAAACCCATCAGATCAGCAGGACCTGCAAAAAGGAAGGCCAAAGTCATGGAGAAAGgaaaagaagagaagaaaggagTCAAGGATGTGAAGCCTACAGTTGAGGATAAAACCAAAAGCAAGCCAGTGAAAGCAAAACAAGCTGCACTTCCAGcaaaaGTAGCCAGAACCACGGCTGTAAAAGgtaaaaaagagagaagagcagCCAAACCTGCTCCCGAGGAGAAAAAACCTACCATCAAATCAGCTCCAGAAGAGAAAGGAGCTGATTCAGAAGAAAAAACAGCTGTTCCACCTGTACCAACAAAAGAATCCAAAGTTGAAGAAAATGTTACAGAAGGGAAGAAGCCAGGCAAGATCCCATACTTCCAGTGTGTGCTAGTGGGTGGAAAAGCCAGCCAGTATCCATTACGTCCGTTATCTCCTGCTATGACTCCTGCTATTAACCCGGCCATGATGAGAGCCATGATGGAGCAGAGAGCCAGCGTGCTTGAGCAGAAATCCCGGCCAGCAGGGCAGTAACTCCGAAAGCTGCTGCTGATGCTCTCACACTGCTGCTAGTCTCTTTATCACACTCTGATCTAATGCTAACCACATGagagacttttttaaaaattcttgtCTTATGGGTTTTAGAGCCAATAAACTGTTTCTTTATAAAAGGTCGTAACAATTAATCCATGCACACTGGTAAAGaaattattaatgataaagcAGGAGCAGTGTTTACATGATAATAGAGTACACAAAAATACATATGCATTTAGAATTACATGACATGTCATATTACATATTGCATATAATGTTTAACAGTAATATGTTTCAGCAACATTCGGGGCTGAGTTTCTAGAAAGCATCACAACTAAATGGTAGAGCATGCATCATGACAAACTCTCTCTACCAGTTAAAATGATCTTAAATTtacaatgcttttgggaaaccgGCTCCAGATCTGTTTACATTTGTGGACGTTTTGAAGAAACCTCGTTTTAATGGTCAACATAAGACTATATTAGAGGATTACATTTAGACTTGAACATGTATGACTCAACTGTATGCtctataaatttttatttacttatttaactAGGCATTTACAGTAATGTATTAGAGAGGCAGAGTAAACTTGTGATTGCTTTGCCGGAAAAATATCCACATGTATACACTGGAGATTTTATCTCTTGCCACAGGCCATTTCCTTTATGTCGCTGTAATATGATCAGGTAAAAAGATCTGTAACAACAATCACATTACTGGAGGTAATATTTATGAAACTAAGTATAGACAAGACAAAATCTAAATGTTTTAGCCCCGTAAAGTCTCAGCTTATTCTTCAGTTGTTCATCTTAATACATATTGTTCAGAAACTACTATAAATTTATCAGTAACTATGTTTAAACTAATAGAAAAACTGTGTAGTAAGAGCAAGAGTGAGGATTATAAGTCTAATCGATTCTAATGAAAATGTAGAGcgtatacagtatgtgccagtgttaaacatttatattgtattttgtttgttggtAATACTTCCTATGCATCCagtattcataatgcattagaaAGCCATTTATGTGTTACATAGCATCCATAACATTCATTACAGATGTATCCATCGTGGATGATGCAGCTTGACCTCTCCTCTTTTCTGCAGACACAAATGAGCTTGTAAGTCACATGATAATGCAGAACAGTAACGCGGACATTTTCATAACATGGAAACTCTCTGTATTCACAGTATCTTAAAGAATTTACAGTGTAACACTATCTGCATTGTGTTATTGTAGCATGTTACCATATCACGTGACTTGGAAGCCTATTTGTGTTTGTGGAAAAGAGGAGAAGTTTCATGAATCTAATCATATGCTGTTAAAAGCACAAACCTTAGGCATGACATGGTCAATGGTCAATATGTTTAAGAAAAGaggcaaaattatttattacatatcgaTCATATTCAAATCGCGTAATGGTATAGGTTAGCCAGAGCATTAATTTGCAATATGAGCAATTATACAGGCCTGCGTTAggaattataaattattatacatGCCATATAACACATTCTTAATGCATTTGTAATGCACTATGACTATAGGATTCAGAGGAactataacatatataataatatacgaGAATATATCATTTAAAAGGAGATGCGTCCACTGATCAGTTTAGTGATCAGTTTAGGAAGAACTTGTCTTACAACTTGCCTTCTAtacaacattattttaaataagaaaCTATGTCAAAGAAGGTGTTTTAACTTATTATGACCAATAGACTATAGACAATTTAAATACAGTGGTATGATGTTAGCACGTTGTTGCCATCAGCGCTGTCACACTCCTGGAACATCTTCCACCATatgtgagattaaaaaaaaaatctaggagTGGCTTTCAACTTGATTTCCTATATTGTCTTATTCAAGAATTGACTTCCTGTCTGTATACAAGCGGTCACTGAACTCAAAATATCAGCTTGCATGTTAAagatattttcataatcatgtGGATGGATCAGGAAGGAACAAAAAGCTGTAATCATGTGCAAACTGTGTGACTTTGTATGGATACAGCAGCACTAATGTACGATGTAAACGTAAATGGAGGTTTTGATGATGGTAATGACTGAGCCAGTGTGCTGTAACAGCATGACTGAGAGGAGGAAAGTAGGCCACAGGAATAATCTCACTGCTGTGTGCTGTCTTCTCCTCCTGAGCTCTCAGGATGATGGCTGAGCTTTAAGAATTCCAGCCATGTTTCTCTGATTTAACAGACATATCAGTGAAAAACTGAGGTTTTTAGGCAAATGATTGAAGTACTGAGGATATACTATTTTTAAGAGTTTTTGTCCAAATGTACAATAATTGtaattttgtgtttctgttgttaTGTTGTTATATAGTGAGCAATGCTATTATTAATTGACTAGGGAATACTCAGGATTTCATTTAGCAGGGGTAGCATTTAATATttgctgctttttgtttttatttcattttttcctttgCATGATAGTTATTTTGCTGTAGATGTATCTTTTCAAAGGCATGTTGTCACATTTCAGACTGATTGGATCAATACCAGAATTCACCATTTCCCCTGAATAATTCTGTTGCCCTGATGCTTTTTCCATTATTCTGATTCTTTTCTTCTTGAAGTAAACCATGAATATATTCAGGGGAACTCTGATTAGCTTAAATAATTTCAAACATCACATTATTCAGTCAAGGTTGGTctattgtaatgtaatgtaatacagaaataatgacCTAATAGGATtgaggatttttaaaatgtgtcactAAGTTTGCCATGGCCATTCTAGGTAGATCAATGTAAAGAGAAATGTGAGGTTTGtttcaataaaatgtataaaaaatgggCAA

Function

symbol description
trdn Predicted to enable signaling receptor binding activity. Predicted to be located in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; cardiovascular system; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in catecholaminergic polymorphic ventricular tachycardia and catecholaminergic polymorphic ventricular tachycardia 5. Orthologous to human TRDN (triadin).
fbrsl1 Is expressed in several structures, including Kupffer's vesicle; anterior neural rod; brain; midbrain neural keel; and presumptive diencephalon. Orthologous to human FBRSL1 (fibrosin like 1).

NR:

description
triadin-like isoform X11

GO: NA

KEGG:

id description
K23449 TRDN; triadin

RNA

RNA id representative length rna type GC content exon number start site end site
TU350684 False 627 lncRNA 0.44 3 15137607 15143067
XM_026922916.2 True 6243 mRNA 0.40 30 15123767 15189612

Neighbor

gene id symbol gene type direction distance location
hddc2 hddc2 coding upstream 282466 14837944 ~ 14841301 (+)
esco2 esco2 coding upstream 416739 14697281 ~ 14707028 (+)
scara3 scara3 coding upstream 463821 14645633 ~ 14659946 (+)
reps1 reps1,LOC107727647 coding upstream 502869 14597191 ~ 14620898 (+)
papola papola coding upstream 700595 14403617 ~ 14423172 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 125441 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 146572 15336184 ~ 15336256 (+)
LOC113532226 LOC108257938 coding downstream 295479 15485091 ~ 15487397 (+)
tbc1d32 tbc1d32,LOC107580719 coding downstream 317247 15506859 ~ 15557349 (+)
man1a1 man1a1,LOC106607779,LOC107727625,LOC106571376 coding downstream 462555 15652167 ~ 15762183 (+)
G295917 NA non-coding upstream 253495 14843050 ~ 14870272 (+)
G295896 NA non-coding upstream 347835 14775723 ~ 14775932 (+)
G295852 NA non-coding upstream 403799 14718285 ~ 14719968 (+)
G295822 NA non-coding upstream 458000 14665532 ~ 14665767 (+)
G295818 NA non-coding upstream 459386 14664093 ~ 14664381 (+)
G296181 NA non-coding downstream 115949 15305561 ~ 15305765 (+)
G296151 hsf2 non-coding downstream 134237 15323849 ~ 15324587 (+)
G296240 NA non-coding downstream 205207 15394819 ~ 15395021 (+)
G296247 NA non-coding downstream 266670 15456282 ~ 15501827 (+)
G296249 cx32,cx32.2,LOC108257940,LOC108424424,LOC107602176,LOC107727577,LOC107675217 non-coding downstream 285246 15474858 ~ 15476834 (+)
trnas-gcu_16 NA other upstream 736210 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 738262 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 739380 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 741015 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 819076 14240519 ~ 14304691 (+)
G296138 NA other downstream 34034 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 976786 16166398 ~ 16180232 (+)
G296562 NA other downstream 1124651 16314263 ~ 16315126 (+)
G296825 NA other downstream 1407538 16597150 ~ 16597787 (+)
LOC113531918 LOC108257642 other downstream 1412092 16601704 ~ 16618438 (+)

Expression


Co-expression Network