G296249 (cx32,cx32.2,LOC108257940,LOC108424424,LOC107602176,LOC107727577,LOC107675217)


Basic Information

Item Value
gene id G296249
gene name cx32,cx32.2,LOC108257940,LOC108424424,LOC107602176,LOC107727577,LOC107675217
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15474858 ~ 15476834 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350847
CACAATATTAATGTGCAAATACAGTTTAAACACAATGACCATAGTTTAATGTCACATATTCTAGGCAGTATCTTACAAGCTTTGTCAGATATTTCATAAGTCATGCAGTATGTTTAAAGTATTATTCTGCACataaaaaatgcttaaaaatttaaaagtgtTGAAGTAACACAATAAGGTGAAATCTGTATGTGATTATAGAGTATCAGGATATAAATGACAGGAAAATTAATCTATTGCCTAAAGCTGACTGGAAGAGTAAATTAGAGTCAACTCAAAAAGTACAGTGTGTCTTCTGGTGTGCAATATCATTAGTTTACTATGACAATATATTAGCCTActaaataatacagtatattcatacatttttgttACACTCTAAAAAACGATGGGTTATTTTTTACAAACCAGTTGCTGGGTTTAGCTTGTCTGGGGTTGGGGATGTGAACCTGAAAAGGAACAGGCAATTGTGCCAAGATTCATCATCTGGAAATTTCCACTGCTGAGACAGAGAAGCAACTTATCACATTATAGTTGAGTCAGACTGCTTTCATagtatgtgtttttgtacagaaaaAGTGCTGCTTGAAGCTTCTTTtatgctgattaaaaaaaataaaaatcacacacactgtaaccataagaACTCAGCGACTGTAGTCCAGCAATGTAATCATTTTTGCCCACAAGTTGGGTTAGACAAACCAACCCAGCATGCTGTGGTCAACATCCTAACCCTTTCTCACTAAATTAAAACAACCTATGCTGGCTTAGTTCATACTGGACCAGCACCGAGTTTCCAAATTTACCCAAGTTGGGATTTTTTAACCCAGCAATTTTTAGAGTGTAGTTATGCATGTAGATTTACAGTTGTATTTCTTCAGCAGCGTTATGGCCCCTGTATGCCCAATGCTTCTCCATGACTCCATTCATGCCGTTCTGCTTAACACACGCTGCAGCTTCCAGGCTTATTGCACCTAATGGTGGACTATTGGCATTTATATTGTAGAGCATCAGGCCTTCATGTTTTGGCCGTCTTCTTACTCTACAACAaagcaaatagcacacttctAGCACATTCAAGGCCAGGGAAACGCATGCAACTGCAAGcataaagataataaagatGGTCTTCTCTGTGGGTCTGGACATGAAGCACTGTGTGACCACTGGGCAAGGGGACTTGTTACATTGGAATTCAGGTATCATTACAAAGCCGTACAGGTAATACTGGCCAACGATGAAAGCAACTTCCAGGATGATTTTGAAAACAGCTGTGTCAAGTAGCTACACAGCAACCTGCCCTTGATTCGGACTTTGCCATTTTCATCTGTGTATTTTGGTGCCTTGACTGACTGGTTGCTCTTGCGCATCTCTCTAAGCTTGTTCTCCTGGTGGATGATGTGGATGGCGTGGCCTAGGTACAGCAGGGTTGGAGTGGACACGAAGATTATCTGCATGACCCAAAAGCGGACGTGTGAGATGGGGAACTTCCAGTCATAGCAGATATTCTCACAACCCGGTGTGAGGGTGTTGCAAATTAAATCAGATTGCTCATCTCCCCACACATTCTCAACTCCTGCGCCCAGAACGAGGAtcctgaagatgaagaggacGCTCATCCAGATCTTGCCAATGACGGTAGAGTGGGACTGCACCTTGTCCAGTAATGTGGAGAGAAAACCCCAGTCTCCCATTGTGTTTGATGATCAGGTTTAC

Function

symbol description
cx32 gap junction beta-1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350847 True 1719 lncRNA 0.41 2 15474858 15476834

Neighbor

gene id symbol gene type direction distance location
trnaa-cgc_8 NA coding upstream 138602 15336184 ~ 15336256 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding upstream 152375 15315053 ~ 15322483 (+)
hddc2 hddc2 coding upstream 633557 14837944 ~ 14841301 (+)
esco2 esco2 coding upstream 767830 14697281 ~ 14707028 (+)
scara3 scara3 coding upstream 814912 14645633 ~ 14659946 (+)
LOC113532226 LOC108257938 coding downstream 8257 15485091 ~ 15487397 (+)
tbc1d32 tbc1d32,LOC107580719 coding downstream 30025 15506859 ~ 15557349 (+)
man1a1 man1a1,LOC106607779,LOC107727625,LOC106571376 coding downstream 175333 15652167 ~ 15762183 (+)
trnad-guc_27 NA coding downstream 289886 15766720 ~ 15766791 (+)
trnav-cac_15 NA coding downstream 290104 15766938 ~ 15767010 (+)
G296240 NA non-coding upstream 79837 15394819 ~ 15395021 (+)
G296151 hsf2 non-coding upstream 150271 15323849 ~ 15324587 (+)
G296181 NA non-coding upstream 169093 15305561 ~ 15305765 (+)
G295917 NA non-coding upstream 604586 14843050 ~ 14870272 (+)
G295896 NA non-coding upstream 698926 14775723 ~ 14775932 (+)
G296334 NA non-coding downstream 81795 15558629 ~ 15558848 (+)
G296340 NA non-coding downstream 104081 15580915 ~ 15581183 (+)
G296348 NA non-coding downstream 230885 15707719 ~ 15763117 (+)
G296358 NA non-coding downstream 244837 15721671 ~ 15722446 (+)
LOC113532272 NA non-coding downstream 343520 15820354 ~ 15863193 (+)
G296138 NA other upstream 169458 15223646 ~ 15305400 (+)
trdn trdn,fbrsl1 other upstream 285246 15123767 ~ 15189612 (+)
trnas-gcu_16 NA other upstream 1087301 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 1089353 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 1090471 14384306 ~ 14384387 (+)
G296430 LOC108257881,LOC107603058 other downstream 689564 16166398 ~ 16180232 (+)
G296562 NA other downstream 837429 16314263 ~ 16315126 (+)
G296825 NA other downstream 1120316 16597150 ~ 16597787 (+)
LOC113531918 LOC108257642 other downstream 1124870 16601704 ~ 16618438 (+)
afdna afdn other downstream 1203262 16680096 ~ 16807291 (+)

Expression


Co-expression Network