G295917


Basic Information

Item Value
gene id G295917
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14843050 ~ 14870272 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350475
tttttattttgctttatgcCCCGAAGGAACAATCAGCTCATCACAGATGAAAAGACAAAATGTCTTAACAAAGCATCAGATTTGTCCAGTTGAAAGTTCAGTATAACAGTGTAACAGGTACTTCTTCTAGTCCACCTGAAGTCCAGCAAATTGATCCATCTCACATATAAAGTcaaataaatggaaaacatACCTACATGCAAGGTAGCCACGACAAAACACACAACCGTTGACTGGTACATCATGGTTGATGACCTAGCCAACATTGTTTAAGAAACACTTGTCGATGAAAGTGGGCAGATGACCTCTTTTCTCCCAGACACTtcctttttatatttcatacttaaaataaatatcagtcCAACAGGGAAAAGTCCTGAAATACATTACGGCTTGATGATTTGAAATCACATGTAATGTAATTTGGTTGCCAGGTCTGTTTGGTTACTGTGGGTTGGGAATTTGGGGATATTGCTTTAATAGTACTTTAAAAAGAATGTATCACATGACGTTACAACACATTTCGCAATGGTTCCCATGGATTTGTGATGAATTCAAGGTTTGTgaatttttgtgaatttttgtgaattttggtACTGGGTTGATTTTCTTGCCAATTGGACTAGACTAAATAGTTTTGAACAACCATTTTGTCACACAGGTAACCCTGAACCGGAAATACAGAGTactttgtttaaataataacatcAAAGTCAACAAgtgagcacaaaaaaaaaaaaaaaaaaaaaataaaaccttagcGTGTGTCAGTGGACGGGAAGGCTCTATGCTAACaccataaatgataaacagcAACACGCTTTTACTGCCCAGAGCCTACAGCCCCGTCCTCTTGTTCTGATTTCACAAAATTACAGTTTTGCGAATTTACAGGATACCTTGATAAAGTCAGCTCAAATGGGAGTTTTTCACAtcctgcgtcctttccccttcagtgaactgcCTTTTACGCACATTTTATTCGTGTTTGGCCTGACGGTTactttagctgaaaaagcagaaaagtgtacCTTTCAGGTATCCACTGCATTGCTATACAAAGGTGCAACAGCTAAACCGTAAATGTTGGCACCCCTGCTGGCGAATGAAAAGCAAGTATAACCTCGGCCCTAACTCCGTCTATCTCTCTTATCTTTATATCGTGTAAGAAAAATTAGATCAGCTCACACCACAACTATTTGAATGCATATAAATATCAGGTGTAATAGCAGGGGCTAGTTTGAATATGGATATCCAGATACACAATGCATGTTAGTGTGAGGTGTAAACAAGGCCTCAGGACTGACACAAATGGCATGGTGATAATCTCCTAGGCAGTAAGTCAGATCAGCATCcgaacacacacatttttgttgATGGTGCAAAATTCCAGTAGAGTGCAGTGCAGCATGCTGGGtcaggatatgtgtgtgtgtatgtgtgtgagagaactgAATTCCTATTGACCCCATCAAATCCCTGAATAATCACTCGAAACATCCAGATAAAAGCATTCTATGCGCTAAAAAGAATGAAGCTAAAATGCACGACTCTCACATGAAGCATCAGTTCCATCTATAGTAAAGGTTTGTAAACTGGATGAATTCTTACATACGTTGCTGTGTTGTGAAAATCCTTGATGGAGTAGTGATCTGTGTGTTGGAggtaaaggggaaaaaaaacagagctcaCTCGACCATCATCCATATCACcgtgtagtgtgtgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350475 True 1760 lncRNA 0.39 2 14843050 14870272

Neighbor

gene id symbol gene type direction distance location
hddc2 hddc2 coding upstream 1749 14837944 ~ 14841301 (+)
esco2 esco2 coding upstream 136022 14697281 ~ 14707028 (+)
scara3 scara3 coding upstream 183104 14645633 ~ 14659946 (+)
reps1 reps1,LOC107727647 coding upstream 222152 14597191 ~ 14620898 (+)
papola papola coding upstream 419878 14403617 ~ 14423172 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 444781 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 465912 15336184 ~ 15336256 (+)
LOC113532226 LOC108257938 coding downstream 614819 15485091 ~ 15487397 (+)
tbc1d32 tbc1d32,LOC107580719 coding downstream 636587 15506859 ~ 15557349 (+)
man1a1 man1a1,LOC106607779,LOC107727625,LOC106571376 coding downstream 781895 15652167 ~ 15762183 (+)
G295896 NA non-coding upstream 67118 14775723 ~ 14775932 (+)
G295852 NA non-coding upstream 123082 14718285 ~ 14719968 (+)
G295822 NA non-coding upstream 177283 14665532 ~ 14665767 (+)
G295818 NA non-coding upstream 178669 14664093 ~ 14664381 (+)
G295787 NA non-coding upstream 211890 14627102 ~ 14631160 (+)
G296181 NA non-coding downstream 435289 15305561 ~ 15305765 (+)
G296151 hsf2 non-coding downstream 453577 15323849 ~ 15324587 (+)
G296240 NA non-coding downstream 524547 15394819 ~ 15395021 (+)
G296247 NA non-coding downstream 586010 15456282 ~ 15501827 (+)
G296249 cx32,cx32.2,LOC108257940,LOC108424424,LOC107602176,LOC107727577,LOC107675217 non-coding downstream 604586 15474858 ~ 15476834 (+)
trnas-gcu_16 NA other upstream 455493 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 457545 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 458663 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 460298 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 538359 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 253495 15123767 ~ 15189612 (+)
G296138 NA other downstream 353374 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1296126 16166398 ~ 16180232 (+)
G296562 NA other downstream 1443991 16314263 ~ 16315126 (+)
G296825 NA other downstream 1726878 16597150 ~ 16597787 (+)

Expression


Co-expression Network