G296859


Basic Information

Item Value
gene id G296859
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16664218 ~ 16693583 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351520
tgtgtgtgtgtgtttggggcggtgggagagagagagaaagggagaacaGGCCTTAAGATAACACTGGAATGAGAGTCCAGGCACTTGGGGAAATGCCGTGTGCTCTGATGGGTAAAGTCAAGCAACACGATAATGTTTTTCCCAAATCACTGACGGTACAGGGTGTGTCGTTCTGACCGGTCAGCCTGTACGTATGAAGTGTacgaataaaactgaaatatgtaatatattcatTTGAATGAGTCTTTACACCTTTTTACACAGAAAGtgtgacaaaaagaaaaaaacaacagaaacctGATGCTTTATAAAGCAAATAGGACCGAATCAATGTCATAAATTTATCCTTAACTTTAATATTGCGATTTTTTTCAAActaaggagtaaaacatgatTGGATGTGCTCTTTCAGGAATATAATCAataactattatttattattttgctttaacAGCCTTCTCTTATAACACAGTGATTTCCCAacgattatttaaaaaaatgtattaatacgTGCCATATTatacgttttatccatttctagttacatttaatgttgtggaacatccatgaaacaagttattgcTTGTGTTTTAGgaagttccctcaccagcctctcgcTTTCTCTCGTGAATTCCAAAAGacttgtcacgttactgagaaatcgAAACGCGTGAACTCCtctgtcggaaaacttaaagataCAGCCTTACCCCTGACCTTTACAAagtgccgacactggagactccttccatgaatgttaaataaatgtctccttacagaaaacttgacaaagctgttactatagaaaccataacatgtTTGTAGCTGaatcatctgaccaatcagaatcgagaattctcCAGTGCTTTCTTgcattaatatgtaaataatatgaaaatctgaaaaatattgGAGTAATGAAATTTGTCTGGACGGCTGTAGTGTTTAGGATGTGGTCATGTTGTGAAATCGTGTTTGCCCGTAGCCTTCTGTCATAATCTCCTACTCTCCTCTGCATTCTTGGCGTGGAAATCACCGCCTGGAGAAAAGCAAAGCAGCTCGAGGAGCCTCACCCTGAGACACGAAATTCAGAACATGTGCTGTTTCTTATTTTCACTCCCCTGCTGTTctgctcttctgtgtgtgtgtgtgttttttttttaatccgcgTACCTTCTGTGTTCAAAACCACACCCCAGATGTCAGAGCCAGATGGAAGGTTGGGTTTGTTCCTCCAGTTTATGTTCAGTGCAATTGGATTAATCTAAAAGAGTTTAAGAACAGTTTTATCACAGTCACAGGTTTGTGTAGTTTTACAGCCCCTGGTTTTGTAGGACGCTTTCCATTCTCTGTCATTGAGACATTATTGTGTCCGATCTCTGAGCCATATTGTAAGAAGGACagtaaagaagtgtgtgtgtgtgagagagagcgagagagagaaatattttGAGAACTGAAGTGTTTGAGAAACTTGGTGAAGAACAACACCAGTGTCCTGTAGCGTAACAGTAGGTGGGTCAACCATAAAACGCTGCTCTGATCCATAGTGGtccatcattattattatttttttcaattccaTTAAACCGGACAGCTGTTACAGAGCTGGCCTTCTGCGACTTGTCTGTATTTTAACCCAAAGATGGAGATGAgcttttcctctctctcgctGGTGGTTTGTGAGAATTCCTTTGTTCAGCATGACTTTCACagcacataaatatattattttattttctcttattttggTCTAATCACATTTTTCAATAATTTCACCAGCTTCTTCCTGGTTTCCCTTCCTCTGTTGTGTTTAATTTCTCTAAACATTTATGCCATAGCTGTGGTAAAACATACACTATGTGGttaaagtttgtggacacctgaccgtcacactcgtatgtgtttcttccccaaactgttgccacaaagttggaagcacacaattgtatagaatgtctctgtacgctgtagaattacaatttcccttcactggaactgagaggctcaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagtgtgaagattggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacgcctttgagatgaactggaacaccgactgaaccccagacctcctcacacaccccagtgcctgatctcactaatgctcttgtagctgaatgaacacaaatccccacagctacactccaaaatctagtggaaagccttcccagaagagtggagctcattataacggcaaacaaagggggaataaatctggaatgggatgttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351520 True 2327 lncRNA 0.41 2 16664218 16693583

Neighbor

gene id symbol gene type direction distance location
LOC113532379 NA coding upstream 90663 16571750 ~ 16573555 (+)
slc22a2 slc22a2 coding upstream 95208 16559538 ~ 16569010 (+)
igf2r igf2r coding upstream 106112 16508562 ~ 16558106 (+)
tdrd15 tdrd15 coding upstream 157897 16491453 ~ 16506321 (+)
gopc gopc,LOC107727658,LOC107743304,LOC107697149 coding upstream 312162 16338194 ~ 16352056 (+)
snx9b snx9,snx9b,LOC108424479,LOC103024560,LOC107678839 coding downstream 146953 16840536 ~ 16881841 (+)
pomcb NA coding downstream 203954 16897537 ~ 16912713 (+)
si:dkey-206f10.1 LOC108257757,LOC108424481 coding downstream 274995 16968578 ~ 16981887 (+)
parp1 parp1,LOC107697162,LOC107678834 coding downstream 291110 16984693 ~ 17007941 (+)
lin9 lin9,LOC107678835,LOC107726751,LOC107697095 coding downstream 314612 17008195 ~ 17022604 (+)
G296806 NA non-coding upstream 85069 16575067 ~ 16579149 (+)
G296594 NA non-coding upstream 241937 16420786 ~ 16422281 (+)
G296592 NA non-coding upstream 265750 16397981 ~ 16398468 (+)
G296568 NA non-coding upstream 341706 16321326 ~ 16322512 (+)
LOC117599799 NA non-coding upstream 357785 16299002 ~ 16306433 (+)
G296864 NA non-coding downstream 33702 16727285 ~ 16810842 (+)
G296866 NA non-coding downstream 78348 16771931 ~ 16781784 (+)
G296936 NA non-coding downstream 378238 17071821 ~ 17073570 (+)
G296937 lap4a,laptm4a non-coding downstream 380560 17074143 ~ 17075052 (+)
G296940 NA non-coding downstream 388284 17081867 ~ 17082076 (+)
LOC113531918 LOC108257642 other upstream 45780 16601704 ~ 16618438 (+)
G296825 NA other upstream 66431 16597150 ~ 16597787 (+)
G296562 NA other upstream 349092 16314263 ~ 16315126 (+)
G296430 LOC108257881,LOC107603058 other upstream 483986 16166398 ~ 16180232 (+)
G296138 NA other upstream 1358818 15223646 ~ 15305400 (+)
G296863 LOC108257755 other downstream 118534 16812117 ~ 16812793 (+)
syne1a LOC108257639 other downstream 558516 17252099 ~ 17479271 (+)
max max,LOC107721316 other downstream 1095517 17789100 ~ 17807177 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other downstream 1161141 17854724 ~ 17942178 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other downstream 1492444 18186027 ~ 18246057 (+)

Expression


Co-expression Network