G297531


Basic Information

Item Value
gene id G297531
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17824665 ~ 17825396 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352313
TGGATTTGCTGGTAAACACTGAGGACCTCTTTAATGCTGCGTTCAACTTTTTTCCTGCTCTGCAGAAGTAACGGTCTGCAAACCGTCATCTTTAAACTCCTCCAAATGATGGGAGTCGCTAAAACATCGCAAAGGCTCCAttttaacacaataataatattaacaataccAATAAATTACAAACGACTCCGCTAGCTAGCTGTTAAGCTAGCAAAGTTTTTGATTTCTGCCTGTCGTCagggtttttctttctctggtttaGCTCAGATCTTAACACCATACACAGCGATCACTTCCGGGATTTAATAAGTTGAAGATCCGCGAATTGGACATGCGTAGAACCCGCGTCACTGCAAAGATTAAACCGGGCGTTATATTTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU352313 True 383 lncRNA 0.42 2 17824665 17825396

Neighbor

gene id symbol gene type direction distance location
susd6 susd6 coding upstream 65977 17719542 ~ 17758688 (+)
zbtb2b zbtb2,LOC108424498 coding upstream 289308 17523660 ~ 17535357 (+)
nrbp1 nrbp1,LOC107659221,LOC107665360,LOC107737320,LOC103372645 coding upstream 609228 17196227 ~ 17215437 (+)
znf106b NA coding upstream 659938 17155779 ~ 17164727 (+)
ttbk2b LOC108258239,LOC108424489 coding upstream 676661 17129944 ~ 17148004 (+)
rab15 rab15,LOC107668202,LOC107671782,LOC106571087 coding downstream 1757 17827153 ~ 17842404 (+)
rgs6 rgs6,LOC108424512,LOC108257637,LOC107659172,LOC107602058,LOC107721319 coding downstream 131508 17956904 ~ 18067433 (+)
wdr21 dcaf4,LOC107602090,LOC107659175,LOC107562700 coding downstream 281280 18106676 ~ 18114936 (+)
pigh pigh coding downstream 305476 18130872 ~ 18140151 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107668247,LOC107659178 coding downstream 345207 18170603 ~ 18184297 (+)
G297492 NA non-coding upstream 111567 17712804 ~ 17713098 (+)
G297469 NA non-coding upstream 135240 17677389 ~ 17689425 (+)
G297223 NA non-coding upstream 166616 17608598 ~ 17658049 (+)
G297176 NA non-coding upstream 287866 17536485 ~ 17536799 (+)
G297152 armt1 non-coding upstream 310859 17510956 ~ 17513806 (+)
G297558 NA non-coding downstream 85593 17910989 ~ 17998231 (+)
G297631 NA non-coding downstream 360908 18186304 ~ 18187136 (+)
G297632 chac1 non-coding downstream 424886 18250282 ~ 18252424 (+)
G297650 NA non-coding downstream 428030 18253426 ~ 18253628 (+)
G297973 NA non-coding downstream 750596 18575992 ~ 18576356 (+)
max max,LOC107721316 other upstream 17488 17789100 ~ 17807177 (+)
syne1a LOC108257639 other upstream 345394 17252099 ~ 17479271 (+)
G296863 LOC108257755 other upstream 1011872 16812117 ~ 16812793 (+)
afdna afdn other upstream 1017374 16680096 ~ 16807291 (+)
LOC113531918 LOC108257642 other upstream 1206227 16601704 ~ 16618438 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other downstream 29328 17854724 ~ 17942178 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other downstream 360631 18186027 ~ 18246057 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other downstream 670279 18495675 ~ 18528199 (+)
itpk1a itpk1,LOC108257830 other downstream 1270556 19095952 ~ 19137613 (+)
G298379 NA other downstream 1464589 19289985 ~ 19290539 (+)

Expression


Co-expression Network