G297488


Basic Information

Item Value
gene id G297488
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17708768 ~ 18146503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352262
ACACCAATATCTTTATTATTGACAAAAgtatgttagattttttttctttattaaaacaaaacagtgagaAATCCATTTGCTACACTCAATGCAAGGACAAGTTATTCCTTTTACATGGTGTTCATTAGGCTCaaagataaaaatgcaatacTGTAGGTGTCATAACCATAAAATCATAGTCTTTCATGGTTGGCTTAATGTTTCAGAGTTCTATAcagtatttataccacagcatggctcaattctgcattctgattggtcagaaggtgttgattcattttcaatgacagcagctctgacagcagtgcagctgcaaatcatgttagcgtttctatagtaattaGTAAAATAGTGTAATCTTTgagaaactgctgtggtataagagaaataaaaagtctacacacccttgttaaaatggcaggttttcaTGAAGTAAAAGATAGTAAaagacactaagataaatcatgtcagaacttttccaaccttaatgtaaaattgcaaagtctacaaataaagtgaaaaacagtcttTTTAGAAAGaaactttttagggaaaaaaaagaaaaagaaaaaaaaaatttacaatatcctagttgcataagtgtgcacccccctaaactaatactttgctGAAGCACCccttgattttattacaccactcatgtctttttggctaagaggcTCTCAGCGTGAcgcatcttgacttggcaatattgcCTCAAtctttcttgcaaaaaacaTCCTAGATCCACCAGATTGTGAGCGCATCTCCTGTGCTCAGCTCGCTTCAGGCCACCGcacagattttcagttggattcaggtctgcgctctggctcggccattcaaaaacattgatcttttggttaagccgttcctttgttgatttggacgTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU352262 True 894 lncRNA 0.36 3 17708768 18146503

Neighbor

gene id symbol gene type direction distance location
zbtb2b zbtb2,LOC108424498 coding upstream 173411 17523660 ~ 17535357 (+)
nrbp1 nrbp1,LOC107659221,LOC107665360,LOC107737320,LOC103372645 coding upstream 493331 17196227 ~ 17215437 (+)
znf106b NA coding upstream 544041 17155779 ~ 17164727 (+)
ttbk2b LOC108258239,LOC108424489 coding upstream 560764 17129944 ~ 17148004 (+)
slc35f6 slc35f6,LOC107721386,LOC107737338,LOC107665330 coding upstream 580839 17119934 ~ 17127929 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107668247,LOC107659178 coding downstream 24100 18170603 ~ 18184297 (+)
zbtb25 zbtb25 coding downstream 471974 18618477 ~ 18625852 (+)
prph2lb LOC108258119,LOC108424527,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225 coding downstream 699157 18845660 ~ 18849892 (+)
serpina10a LOC108258118 coding downstream 705128 18851631 ~ 18857872 (+)
LOC113547694 LOC108257617 coding downstream 748573 18895076 ~ 18904325 (+)
G297469 NA non-coding upstream 19343 17677389 ~ 17689425 (+)
G297223 NA non-coding upstream 50719 17608598 ~ 17658049 (+)
G297176 NA non-coding upstream 171969 17536485 ~ 17536799 (+)
G297152 armt1 non-coding upstream 194962 17510956 ~ 17513806 (+)
G297123 NA non-coding upstream 446182 17240056 ~ 17262586 (+)
G297631 NA non-coding downstream 39801 18186304 ~ 18187136 (+)
G297632 chac1 non-coding downstream 103779 18250282 ~ 18252424 (+)
G297650 NA non-coding downstream 106923 18253426 ~ 18253628 (+)
G297973 NA non-coding downstream 429489 18575992 ~ 18576356 (+)
G298036 NA non-coding downstream 582471 18728974 ~ 18729402 (+)
syne1a LOC108257639 other upstream 229497 17252099 ~ 17479271 (+)
G296863 LOC108257755 other upstream 895975 16812117 ~ 16812793 (+)
afdna afdn other upstream 901477 16680096 ~ 16807291 (+)
LOC113531918 LOC108257642 other upstream 1090330 16601704 ~ 16618438 (+)
G296825 NA other upstream 1110981 16597150 ~ 16597787 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other downstream 39524 18186027 ~ 18246057 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other downstream 349172 18495675 ~ 18528199 (+)
itpk1a itpk1,LOC108257830 other downstream 949449 19095952 ~ 19137613 (+)
G298379 NA other downstream 1143482 19289985 ~ 19290539 (+)
G298409 NA other downstream 1255046 19401549 ~ 19546734 (+)

Expression


Co-expression Network