RNA id: XM_034313640.1


Basic Information

Item Value
RNA id XM_034313640.1
length 9805
RNA type mRNA
GC content 0.51
exon number 22
gene id sipa1l1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17854724 ~ 17942178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCGGAGCTGGAACTTTGTATGAACTTCTGAGTTGAAGttggcgagagagagagagagagagagagagaaggagagagaggcagagaggcagaGGCGCAGACTGAAGCGAGAGGAGCTGCGGTGCGGCTGATGGACTAGACCTCACTCCATTTATTTAGCAGTTATTTTCGCCTGAAGCTACACACACAGCCCGAGGGTGGGCAGCAACTCGGACTCTGTCTTGCACTCCCTAACCGTTTCTTCGAcggttatttattttatttaccggCTGTTTTTGGAGTTTTTATCTGCGGGAAGCAACGCGGACGAGACTGGAGagtaaagagagagaagcagagagcaaagagagagcaaagagagagagagagagagagagagagaaggAGCAGAGCGTGTGACAGCTGCTTGAGGAAATTCCTGACCGGTTTCACTTTGGCATGACGGGAATTTTTGTTATaattCACTCTCAGAACTGATGGAGAAGGACCACTAATCACTTTGCCGTGTTGCCACGCGGCTTGATTTCCGTTAGAAAGAGACCACTGCTGACGTTGATCCCCATCACCTCGTGCTATCTTGGGTTGTCCCAGGCCTACTAGCTAAGTGGCAGCGCATGATCTCCAGAGATTCCGAGTATTCCGCAAACATGCTCCAGTGCTGAGCTCTGTCTCTTGACTTCACCATGACCAGCCTGAAGCGTTCGCAGACCGAGCGCTCTGTGGGGGGCTCTGTACCCGCCACAGATGAGTTTTACACCCGCCGCCTGCGCTTGCCCAATGGAGGGGCGCCTCCTCCACGCAGCGAGAGCACCCACCTGTCCGGAGGCACACCAGGAGTGCCCAAGATGGGAGTCCGGGCACGGGTGGCTGACTGGCCTCCGAGGAAAgatggaggtggtggtggtggtggtggtggtagtggtagtgGTGGAAGTGGCAGTAGCAGTGGGAGTggcagtggaggaggaggaggaggcggtGTGTGGCACATTACAGTGGAGACCGACTCACCATCGACTACTTCTGGGAGCACCCAGAGCAACCTTTCGGCTAAGCTTGGTCACTTGATCAGCCCACAGGATTCGTCCATGCTGCGCAATATTCAGAATACGCTAAAGAATAAGATCCAGAGCAAGGGCAAAGACAACCGCTTCCTATCCCCAGATGGCTACTTGGGCTCACCACGCAAGGGCATGCGTCGCATTCGGCAGCGCAGCAACAGCGATATTACCATCAGTGAGCTGGACGGAGATGGCAACGAGGGTTGGTCCTTTTCTGGCTGGACACCAATGCACCGCGAGTACGGCAGTACCTCCTCCATCGACAAGCATGGCGTCTCCGGAGAAAGCTTCTTTGACATGCTCAAAGCCTACCAGACTGATGACCCCGATCAGCGTAGCCCTGCTCCTGAGAAATTAAGCGAACTGCTTACTGTGGCACACAAGCAGACCGCCCTCGACCTGCCAGACGGCCCACTGGGACCCCCACGAGGTAGCCCTGCAAGTCGCCTcaaggaaagagaaaagcacCTGAAACGGCGTTCCAAGTCTGAAACTGGAGGCGAGTCCATATTCCGCAAGTTACGAAGCGTGAAGGCAGAAGGTGACTCCTCTCGCGCAGGTTCGGATGCGGAAGATGGGAAGTCTGAGGATACAGGTCCTCCTCCAAAACCCTGGGTCTGTCAGAAGGGTTTCGCCCATTATGATGTCCAGAGCATTCTGTTTGACTTGAATGAAGTAGTGCAAAACCGACAGAGTGCTTCCAAAAGGAAGAACACCACCACCGGAGCCTCTGCCGCCGCCGCCGCTTCagcctccacctcctcctccttatCGTCCACCCAGAGCGGGGCCTATGGCTCCCCCTGCGGCAGCCAAGAAGAGCTCAACGCCAAGGACGGACCAGCGCTGGACCCCGGTGACGATAAAAGCAACGATCTGGTCCTCAGCTGCCCCTGCTTTCGTAATGAGATAGGAGGCGAAGGTGAGAGGAACATCAGCCCTTCGAAACAGGGCAGCATCGGCAGTAGATCGGCTAATTCTTCCAGGGACGAGGACGGGTCCCGTGAGGCGGCGCCCAGCACGCATTTCAGTAACGCAGGGGTGGCTGTGCTGGAAGCTCCCAAAGACGGGAAGAGCATTCACCATGAGAGGGGAAAGAGCAACATTTTGGAACATGTGGACTTGGGTGCCTATTACTACCGGAAGTACTTCTATTTAagagAGCACTGGAACTATTTGGGAGTGGACGAGACACTCGGCCCGGTCGCTGTGAGTCTTCGGCGAGAGAAGCTGGACGATCATAAAGAGCACGGCCCGCAGTACAATTACAGGGTCATCTTCAGAACCAGTGAGCTGATGACTCTGCGAGGCTCCATTTTGGAGGATGCTGTTCCCTCCACATCTAAGCACGGTTTGGCTCGAGGCCTGCCCCTAAAGGAGGTTCTGGAGTACCTCGTCCCTGAACTGAACGCTCACTGCCTCCGCCTCGCCCTCAACACGCCCAAAGTCACGGAGCAGCTGATGAAGCTGGATGAGCAAGGGctgagtTTCCAGCTGAAGGTAGGGGTGATGTATTGTCTGGCTGGCCAGAGCAGCGAGGAGGAGATGTACAACAACGAGGCGGCCGGTCCTGCGCTGGAGGAGTTCCTGCAGCTGCTCGGAGAACGAGTGCGCCTCAAAGGATTCAGCAAGTACCGCGCTCAGCTCGACACCAAGACTGACTCGACTGGCACTCACTCCTTATACACCACTTATAAGGACTACGAAATAATGTTCCACGTGTCCACCATGCTGCCCTACACCCCCAACAACAAGCAGCAGCTGCTCAGGAAGCGCCACATCGGGAACGACATCGTCACCATCGTGTTCCAGGAGCCCGGAGCCAAAGCCTTCAGCCCCAAGAACATCCGCTCTCACTTCCAGCACGTGTTCGTGGTGGTGCAGGTGCACAACCCATGCTCGGAGAACACCTGCTACAGCGTTGCTGTTGCCCGTTCCAGAGACGTCCCCGCGTTCGGACCACCCATCCCAGAGGACGTGAAGTTCCCCAAATCCTCCGTCTTCCGGGACTTCCTGTTGACGAAGGTGATCAACGCGGAGAACGCCGCGCACAAGTCGGACAAGTTCCGCGCCATGGCGACACGCACGCGCCACGAGTACCTGAGGGACCTGGCCGAGCGCCACGTCACCAGCACGCCGATCGACCCCTCGGGCAAGTTCCCCTTCATCTCTCTGGCACACAAGCGCAAGGAGAAGAGCCGGCCGTACTCGGGGGCGGAGCTCCGCAGCCCAGGATCCATCACCTGGGCCGTGTATACGGAGGACCACAGCGCTGGAGGAGAACTCGAAGCCCTGCTCGCCATCTCCAACGACTTCCTCATCCTGGTGGATCCAGAGGCCAAGGCTGCGGTGTTCAACTGCGCCGTTTGCGACGTCATCGGCTGGACGCTGGGAAGCCCCGCCTCCATGAAGATCTTCTACGAGCGCGGAGAGAGCATCTCACTGCGCTCAGTCAACAACAACACCGAGGACTTCAGGGAGGTCGTTAAACGCCTGGAGTTTCTGACCAAAGGCTGCGAGACGTCGGAGATGACGCTGCGCAGAAACGGGCTCGGCCAGCTGGGCTTCCACGTCAACTACGAGGGCATCGTGGCCGAGGTGGAGCCGTACGGTTACGCCTGGCAGGCCGGACTGCGGCAGGGCAGCCGACTGGTGGAGATCTGCAAGGTCGCCGTGGCGACGCTCTCGCACGAGCAGATGATCGACCTACTGCGCACCTCAGTGACCGTGAAAGTGGTCATCATTCCGCCTCACGAGGACGCCACGCCCCGCAGgggttgTTCGGAGCTGTACCGCATGCCAGTGGCCGAGTATAAGGGAAGCAACGAGAGCGGTTCGTTCGAGTACAAGTTCCCGTTCCGctccaacaacaacaagtgGCAGCGCACGTCCTCCAGCCCACAGCAGTCTCTCTCCGCCTCGCCTCAGAGCCACACCGGGACTCCCAACCGCGCCGTCAGCCTGGGAGCCAGCATGGGCAAGACGCTGTCCGCCGAGAGACCGGAGAGAGCGGCTGCCATCCCACGCAGCGTCTCCAGCGACGGCCGACCTCTCGACTCCAAGAGGATGTCTCCCGGCTCGGAGAACTATGCCCTGGCTTCCTCCATGGCGATGGCTCGACCCACTCACACCCGCAGCTCCCCCAGCAACCTGTCCTGCTCCAGTGACACCGGCTCGGGCAGCTCAGCCCACTGGAGGCAGAAGTCCATGCCTGAGGGatttgCCCCGAACAGACACTCTCCTCTCCCGCCCGAGCGACAGATGATGGGAGACGGCAGCGGCAAGTCCACCCCCAGCTGGCCCCGAGTGGACGACTCGGAGAGAGCAGCAGCAGACGCCCCTGTCAGTAAATCGGGACCGTCGTACTCAGGTGGCCCACGCATCCAGAGGCAGGAGCAGGTCATTCATCTGTCACCTAAGAAGAGCAGCCAGTCTGAGGGTCCGTACTCCCACTCGAGCAGTAACACCCTCTCCAGTACAGCCTCCAGCGGCGCTCACAGCGATGACAAGTGGTACGATCTGGGAGGTGGAGGTCAGGGAGACGTCGCTGACTCCGAGCCCAACGGTCTTGGCGGAGGCGGATACCTGCAGGGCTCCTCGGCAGACAGCGGCATCGACGCCACCTCCTACGTGCCCCATCACGGCAGCGCCAGCTCATTGCTCGCTGTGGGCACCTCAGCACCCCGGGAGAGGGTCGCGTCACCGTGGCACGGGCCGTCTGAGGGAGGCCGGCGTGTGCTGGAGCGGTCACCTCCAGCCGCAGAGTCACCTGTCGCTCCTGCAGAGGCTCCGACCACACGCAGTCCTCCTACACATCTGCTAATGCGCGACAGCAGCTCGTACAGCCTCAGCGACATGGCCTCACACTCCAGCTCACGTCACTCAGGCAGCCCCGGAGTCCTCAGCTCCAGTCACAACTCTCCCCGAGACGAGTCTCCCTCCGCCACCTcgccctcttcctcctctcagAGCTCGGTCTCTCCCGGACCCAAGAGCTTCTACCCTCGCCAGGGAGCCACCAGCAAGTACCTGATCGGGTGGAGGAAGCCGGGGAGCACCATCAACTCTGTGGACTTCGGAGACACTCGAAAGAGGCCACAGGGTGAGGGAGGAGCGGATGGTGGACCGTCTCAGACTCGGCCCTCTCTCAGAGACCTGCACTCTCCTCAGCCGCTGGGCAAATCCACTGTAGAAGAGGATCTGAAGAAACTCATCACCCTAGACAGCCCTCCTGCCATCCATCACGACgacaagTCTCTGCAGCCGTCGTGCTCGGGCGCGAGCGGTACGGGCCGGCGCTCGCTGCAGCGCACCCTCTCTGATGAGAGTATTTACCGAGGCCAGCGCTTGCCGTCACTGGGAGATGCGGTGCTGGAGCAGGCGCTCGCCAGCGACGTGCTCTTCAGCTGCTCCACCCTGCCGCGCTCGCCCACCACCCGCGGGGCCCCCCTGCGCAGACCCTCCTACAAACTGGGCATCAAGATGCATGGTGACCTCTCCGCGTCTGACACCTCTCTAGCAGACCTGCACGAGCGCCAGAGGTTGCCATCTCCAGAGCTGGGCCTCATGCCCCTGCCTGACACGGACACGGACAGCGGCCTGGACTGGAGCCACCTGGTGGACGCCGCCAACGCTTTCGAGGGTGAGGGGAGACCCCCACGCATCCAGAGAAGTTTCATGTTCAGTTCTCAGGACATCAGTCACCGTGGTGAGAGTGCTGTGAGCTCTCAGCAGCTGGAGCTGCAGCCTGTACCCCACTCTCGTCTCTCTCCCAGTGATATTCCTGTGGGTTTTGCTGGGAAAGTGTCTCAGCTTGAGGCTATGGTGAAGATGCTGCAGGACGACTTGAAGAAGGAGCGAGAGGAGAAGCTGAAGCTTCAGGCTCAGATCAAGCGCCTTTGGGAGGACAACCAGAGGCTCCAGGAGGAGTCTCAGAACTCAGCGGCCAAGCTGAAGAAGTTCACCGAGTGGGTCTTCAACACCATCGACCTGAACTGAGAGCGCTGCCGGAGCAGCCGCTCCATCACCCAGCTCCACCCGGGACCAACACGAGCACCAATCAACACTCCCACACTTGTTCCATCGAGCATTCCTGGAAGCGAGTCAGAAAGATGGCGCAGGAGCCATCAGTCCTTCTCCAAACCCTCTCATCATGTTTAACAAGAGAACCAATTCGTACTTCTCTGACGTTCCCTTCGGAGGTTCCTCAGAGCCAATCTGCAGGGATGAGTGGTTCCGTCACGTGCATCACGACTACGATACTCCTCAGATCGAGGAAGAACGTGATGAGTCTTAAACGTgacgagtttttttttttttttttttttttttttttttttgagctttaAGAGCCATGTGTGTGAAATTTCGCTGGGTCACTGTGCTATTCGGAgttggtgtgtgtatttttctttcccCTTCTCTCTTTAATTAGCGAGGCTGATGGTGTAAATCTACAACGCAGCAGCAGTACAATCaaaaaacgaaacaaaaaaaaaaaaaatgaaggaaagaagcCACATATCTGATGAAGTATGGACTCatcttggctttttttttcctctcaaacGCAAAAGCAATAGACTGATGTTCTCAATGCGTCAGCTTCACCGGACTGTAATAATACTAAAATCTCACCATGACGGATTCTTATCTTACGTAAAGCAATCGCAGGTCTGCGGTACGAACGCTGAAAACTCTAAaagaccagttttttttttctttttcctctcttttttggGAACAACTCTAATTTATTCCGtttgtattataaataaatatccgTACAGTAGAACgttaatgtttattttccagACAGATGCTCATAATTTaggtgtattattattatgattattattattattattattattattattattattattattattttgtacatttcatttcagcctGATGCCGTTATCTTCCGCGTGCTTTGTGGTGCCCTAGCCTGCTGTCGTCGTGTTGCCttagtgccctctagtggtgaaAAGTGATTGTTTCACTTGCTACAATCTATATTTCAgtttagaaaaggaaaaaaaaaaaagcgttcaTCGTTTCCTCCTTTTGCGTTTGTGTTAATGGACTCAGAGATCAAGCTCAGGCTCAGTGTGtgcgcgcgagtgtgtgtgtgtgtgtgtgagtgtttgtgtgagagttATTCGGTTATGGAGTTATTCTGACGGAGATAACGGATCAGCACAGGAAGCAGATTTCTGGTTACGTGAGCGTTAAGTTTCCGAGTGGAAATTGGGGAAATTGCGGGACAAACCGCAATTTTTGTGCGGTCAGAGTGCCTGAGTGTCTGCTCAGAGGAAGGGCTTTAATCAGCCGATAATCGATACAGCTTAACAGCCTGTAATCTCACTCCTGCCTCTCAGCGCTGGGCTTTCTCTCATCAATCTGATATACACAccgccccacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagacccCGTCCAAACTGGCTGGCCTTGCAAAGGTCAAACTGTAaaggacatacacacacacacacacacacacagacccctTCCAAACTGGCTGGCCTCACAAAGGTCAAACTgtaaaggacacacacacacacacacacacacacacacacacacattcaggtgTGTTAATGACCCAATACTGCAGTAAGTACACACACAGGGCTGTTCTGAGCTGAAAAGGTTCACAAGCaactctataaaaaaaaaatgtaatattcagCAGTGAATGGAGATTATTGATTCTGTTCTAAGAATCATTTGAATCGTTTGAATCGTTTGAATGGTTGAATCATTTCTGGCTACCAGCAGCTAAATGAACGAATCACGTAGAACTCTAAAAGccctgagaaaaaagaaaaaaaagaaaaaaaaaaacctcaatcaATTCAGGTTTGTACATTATAGAGAATCTAGAGACCGCGTGCCTGAGTGAGTTAACGATAACGAGTCGTGCTTCTCCTTTTACTCTTTCAGGAAGTTTTAAATAAGAGCTTCTGTTCTGTGGAACTTGAAcgctgacaaaaaaaatgtattcacgaatatgaattttgtaaatttaaaattatgtacacgccacattaaattatttttttttcaagtgtgtGGTGTATTTAACAAACAATTTTCGCCatctttgttttgaacttgcttGGGGTAagatttgtctttaaaaatatcATAGCATTTGAAGTGATGGGTTACGGttgtgagattttaaaaaaaaatctgaacactaaatattcaaaaatctcaaaaattcaAATAGCAAAActacagattttatgtaaattaggccaAAGGTGAAAAGTAGATGCTTTCAAAGCagtcaaacaaaaaaataattttatgttcTACTCAAACAGAAAGTTTTCTGCAGCGATGGTGAACGCTCGATGCTTAGCGTAACTATTTAAGTAACGTTCTAGCTAGTTTCGCTGCACTAACGTAATCGTTAGTGGCCAAAGTTAGttaggaatttatttatttcagtagaaCATAAAGCTGTAATGGATCATTACGGTTCATATCTAACATTTTGACTGCACTCGAGTCTCTTTACTTCATGGACGTGAACATGAGAGACGACTGTGATGTGGCTAAATCCCGAAAACATCTACTTTTCCCTGGGAATCCTGGATGCTTCGCctatttatttgcataaatttacataaatttacataagATCTGTATTTGCATGGCTTTTCCACTAGGTGGTGGAAGatttatgttttcaggttgtttgtgtgtgtcgagtgtttgtaggatttatatggagcTATTATCGAAACCAGCAGATTAGACGGATTAGATGTTGGAATTGATCCGGAAAgcgtcaaggtcacagcaaggtcaaatataTTTCTTCAAcaacttccttcctgtttgaagaaTTAAATTATAATGCATATTTGTTAGGTCTAGTCCTGCATTTTactgttggtggtgctgttggCGTTGAGATCTGCTtgttcagatttatttattaaaatttttttttttaaatctcaaaacCATCAATAcattaatttgaattatatttttaaaggcaagctagcaaagtttaaaaaaaaaacaaaacaagcactGGCaaaaatttatgtaaatttagaTACACCACAAAAATGAACGGTATGTCATTTAAATATACAGAATTTATATTTGAATACTTTTGTCGGGTTTTAAGCTCCATAACTTTTGTTTACTCGTCACCTTGTTCAATATTCCACTTCAGATTTCTTTGAATGTGAATGTTAactatcttttctttttttttttttttttttcagtcagatttccattttatttgcactgtaatttttctttttttgtatagaTTTATAATTATTGCTATGTTAACAGTTGATGGAGCCTCATAATGTAAACGTCTTATAATCAGTCATCATCACGTGTGACAGGGAGAAGACGGTCATCCACCGAGCCCTCGACCCTTCTCCCCGGATTTAGACGTGTTTCAAAACGGGAGTTGTGTTTCACTTCAATGATGTGCACATTtcttaaaaacaacaataaaaaaaaaaaaaacaacaagaagaaCGAAGCATTATGTATTTAACAAATGAAGAAGTACTGTTTATAttattctgttcattttatttgtaaagtgtagAGGTATAAAGAATCAATTTCCCAGTCATCATAACAGtattaaaacatttcttaaataaattcaggaaaaaaaaaaaaaagatttgagg

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K17701 SIPA1L1, E6TP1; signal-induced proliferation-associated 1 like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352313 lncRNA upstream 29383 17824665 ~ 17825396 (+) True G297531
TU352289 lncRNA upstream 50624 17789131 ~ 17804155 (+) False max
TU352290 lncRNA upstream 50624 17789131 ~ 17804155 (+) False max
TU352267 lncRNA upstream 141681 17712804 ~ 17713098 (+) True G297492
TU352236 lncRNA upstream 165354 17677389 ~ 17689425 (+) True G297469
TU352441 lncRNA downstream 244126 18186304 ~ 18187136 (+) True G297631
TU352442 lncRNA downstream 308104 18250282 ~ 18252424 (+) True G297632
TU352461 lncRNA downstream 311248 18253426 ~ 18253628 (+) True G297650
TU352823 lncRNA downstream 633814 18575992 ~ 18576356 (+) True G297973
TU352899 lncRNA downstream 786796 18728974 ~ 18729402 (+) True G298036
XM_026922990.2 mRNA upstream 12375 17827153 ~ 17842404 (+) True rab15
XM_034313917.1 mRNA upstream 47602 17789100 ~ 17807177 (+) True max
XM_026923311.2 mRNA upstream 96091 17719542 ~ 17758688 (+) True susd6
XM_034313802.1 mRNA upstream 96880 17719542 ~ 17757899 (+) False susd6
XM_026922754.2 mRNA upstream 319422 17523660 ~ 17535357 (+) True zbtb2b
XM_034313599.1 mRNA downstream 14726 17956904 ~ 18067433 (+) True rgs6
XM_034313463.1 mRNA downstream 164498 18106676 ~ 18114936 (+) False wdr21
XM_034313462.1 mRNA downstream 164514 18106692 ~ 18114936 (+) True wdr21
XM_026948094.2 mRNA downstream 188694 18130872 ~ 18140151 (+) True pigh
XM_034313426.1 mRNA downstream 188701 18130879 ~ 18140151 (+) False pigh
TU352300 other upstream 47610 17804219 ~ 17807169 (+) False max
TU351537 other upstream 1041986 16812117 ~ 16812793 (+) True G296863
TU351482 other upstream 1256992 16597150 ~ 16597787 (+) True G296825
TU351185 other upstream 1539653 16314263 ~ 16315126 (+) True G296562
TU351048 other upstream 1674547 16166398 ~ 16180232 (+) True G296430
TU352440 other downstream 243931 18186109 ~ 18195131 (+) False ino80
TU352782 other downstream 553605 18495783 ~ 18504263 (+) False syndig1l
TU353310 other downstream 1347807 19289985 ~ 19290539 (+) True G298379
XR_004580076.1 other downstream 1387047 19329225 ~ 19329925 (+) True LOC117599671
TU353352 other downstream 1582475 19524653 ~ 19546734 (+) False G298409

Expression Profile