RNA id: TU352899


Basic Information

Item Value
RNA id TU352899
length 429
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G298036
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18728974 ~ 18729402 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTTTAGTGTGcactctgctttttttttttttttaataaatttggcaACACATTTCccacaggaatttttttttggaatacaGATCATAAAGGATGATCAGGAATCAAAGACTCGAGAGGAAGCCAATAGACCGAGTCGatcttgattatttttgtcttttggctCATTGAGCAACATCTGAGCAAAATTACTTCGAGTATTTAGAGGCAGGTTCTATTCCAGCAGCAAAAATATTAATCAGTGTTTCATAAATTGAtgaatttgttaattaaaagaTGTCATGTGTCACATACAAGGCTGCTTTCATGCTTGGTATTCATTAAATCttgggcatgttttctttattgcCAATTTCTAACTGGCaattatttttgaagaataaaaaaaaatgttttttcgaCGTTTCTTAAGAAATCTGAGATTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352823 lncRNA upstream 152618 18575992 ~ 18576356 (+) True G297973
TU352461 lncRNA upstream 475346 18253426 ~ 18253628 (+) True G297650
TU352442 lncRNA upstream 476550 18250282 ~ 18252424 (+) True G297632
TU352441 lncRNA upstream 541838 18186304 ~ 18187136 (+) True G297631
TU352340 lncRNA upstream 730743 17910989 ~ 17998231 (+) True G297558
TU352992 lncRNA downstream 133598 18863000 ~ 18863586 (+) True G298128
TU353027 lncRNA downstream 272938 19002340 ~ 19066945 (+) True G298150
TU353031 lncRNA downstream 318628 19048030 ~ 19068115 (+) False G298151
TU353030 lncRNA downstream 318733 19048135 ~ 19068115 (+) True G298151
TU353043 lncRNA downstream 329894 19059296 ~ 19059584 (+) True G298163
XM_026948153.2 mRNA upstream 103122 18618477 ~ 18625852 (+) False zbtb25
XM_026948151.2 mRNA upstream 103122 18619860 ~ 18625852 (+) True zbtb25
XM_026948154.2 mRNA upstream 103122 18620284 ~ 18625852 (+) False zbtb25
XM_026948143.2 mRNA upstream 200775 18495675 ~ 18528199 (+) True syndig1l
XM_034313659.1 mRNA upstream 482917 18186027 ~ 18246057 (+) True ino80
XM_026948089.2 mRNA downstream 116258 18845660 ~ 18849892 (+) False prph2lb
XM_034313444.1 mRNA downstream 116998 18846400 ~ 18849892 (+) True prph2lb
XM_026948087.2 mRNA downstream 122229 18851631 ~ 18857872 (+) True serpina10a
XM_026948088.2 mRNA downstream 122229 18851631 ~ 18857872 (+) False serpina10a
XM_026948155.2 mRNA downstream 165674 18895076 ~ 18904325 (+) True LOC113547694
TU352782 other upstream 224711 18495783 ~ 18504263 (+) False syndig1l
TU352440 other upstream 533843 18186109 ~ 18195131 (+) False ino80
XR_004580105.1 other upstream 791360 17854779 ~ 17937614 (+) False sipa1l1
TU352300 other upstream 921805 17804219 ~ 17807169 (+) False max
TU351537 other upstream 1916181 16812117 ~ 16812793 (+) True G296863
TU353310 other downstream 560583 19289985 ~ 19290539 (+) True G298379
XR_004580076.1 other downstream 599823 19329225 ~ 19329925 (+) True LOC117599671
TU353352 other downstream 795251 19524653 ~ 19546734 (+) False G298409
LOC113523952 other downstream 816670 19546072 ~ 19547137 (+) True LOC113523952
TU353527 other downstream 1353155 20082557 ~ 20083019 (+) False LOC117599696

Expression Profile